BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313478
Length=1305
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27540.1 | Symbols: | Protein of unknown function (DUF295) ... 1059 0.0
AT1G27560.1 | Symbols: | pseudogene of F-box family protein-re... 970 0.0
AT1G27580.1 | Symbols: | Protein of unknown function (DUF295) ... 734 0.0
AT1G27550.1 | Symbols: | F-box family protein | chr1:9568813-9... 322 6e-87
AT2G24080.1 | Symbols: | Protein of unknown function (DUF295) ... 211 1e-53
> AT1G27540.1 | Symbols: | Protein of unknown function (DUF295)
| chr1:9566332-9567906 REVERSE LENGTH=1575
Length=1575
Score = 1059 bits (573), Expect = 0.0
Identities = 983/1171 (84%), Gaps = 68/1171 (6%)
Strand=Plus/Plus
Query 178 AGATCTACGCTCAAACGAACATCGAGTTTTCCGGATCCTGAGCCTGCTAAGGCCT-TGCG 236
||||||||||||||||||||||||||| |||| ||| |||||||| ||| | || ||||
Sbjct 154 AGATCTACGCTCAAACGAACATCGAGTATTCCTGATTTTGAGCCTGTTAA-GTCTCTGCG 212
Query 237 TTCGACTTTGA-TCATGCGGCCAAAATTCGGATCACCATTGCTGATGCTAATTACAGAAG 295
||||||||||| || ||| ||||||| |||||| |||||||||||||| ||| ||||||
Sbjct 213 TTCGACTTTGATTC-TGCAGCCAAAAGCCGGATCTCCATTGCTGATGCTGATTGCAGAAG 271
Query 296 AGGATGGTTGTCGTATCTACAACCCAGAAGATGGTATGGTCTACGAGACGAAGAGTGACT 355
|| ||||||||||||| ||||||||||||||||||| ||| |||||| ||||||||||||
Sbjct 272 AGTATGGTTGTCGTATTTACAACCCAGAAGATGGTAGGGTTTACGAGCCGAAGAGTGACT 331
Query 356 TTTCAGGGTATCGATTCCTGGGAAGCTCCGGTAAGTGGTTTCTGGTGGTAGATTCTC-AA 414
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 332 TTTCAGGGTATCGATTCCTGGGAAGCTCAGGTAAGTGGTTTCTGGTGGTAGATTCTCGAA 391
Query 415 TTGAAACTCTATATTGTAGATGTCTTTAGGGAGGAGAGGATCGATCTTCCACCACTAGAA 474
|||||||||||||| ||||||| ||||| ||| ||||||||||||||||||||||||||
Sbjct 392 -TGAAACTCTATATTATAGATGTATTTAGCGAGAAGAGGATCGATCTTCCACCACTAGAA 450
Query 475 TCATTGAAAGGTAGCC-TTTATAAGATT-GAGCGAGTAGGAGAGAATAAAGTCAGGAATA 532
||||| || ||||||| ||| ||||||| | ||| | ||||||| | || |||| | |||
Sbjct 451 TCATTTAAGGGTAGCCATTT-TAAGATTTG-GCGTGAAGGAGAGGAGAATGTCAAGCATA 508
Query 533 TATTA-TACA-G-TGATTTATC--TCCTGGG--GA-T--CCTCATACTGCCGAAGATCTG 582
| || | | | ||| ||| | || | || | |||||| ||||||||||||||
Sbjct 509 TGGTAATGGATGATGAGG-ATCCATTTTGTGATGAATTTCCTCATGCTGCCGAAGATCTG 567
Query 583 AGAGGTCGTTTGTGGGTAGGCGACAACAA-GGAAGACTACGTTGTTGTGTGGCATTTTGA 641
||||||||||||||||| | |||||| || |||| ||||||||||||||||||| |||||
Sbjct 568 AGAGGTCGTTTGTGGGTTGACGACAAGAATGGAA-ACTACGTTGTTGTGTGGCAGTTTGA 626
Query 642 AATGAACG-ACTTTCTAGGGTTTTGCAAGAAAGGGGATGATCATTACCGCGAGAT-CTTA 699
|||| || | |||||||||||||||| || |||||||||||||||||||||||| | |
Sbjct 627 AATGTACCCA-TTTCTAGGGTTTTGCAGGACAGGGGATGATCATTACCGCGAGATTCC-A 684
Query 700 ACA-AGGACCG-GTGTTC-GCAGGGAGTTACGCGGTGTAAAAGATATGGTACTTAAAGGT 756
||| || | | | |||| | ||||||||||| ||| |||| ||||||||||| ||||||
Sbjct 685 ACAGAGCTC-GAG-GTTCAG-AGGGAGTTACGAGGTTTAAACGATATGGTACTGAAAGGT 741
Query 757 TACAGCCTTTACGTCCT-TGCCATCCGTGACTTCATTCGACACTTGGATTTGTCTGGACA 815
|||| ||||||||| | ||||| |||||| |||||||||||||| ||||||||||||||
Sbjct 742 TACAATCTTTACGTC-TATGCCACCCGTGAGTTCATTCGACACTTAGATTTGTCTGGACA 800
Query 816 TGGTGAAGATGGTATCAAGGATGTGTCCGAGAACCATAAGCTTCCAATGTGGATGCCAAG 875
| |||||||||| |||||||||| |||||||| |||| |||||||||||||||||||||
Sbjct 801 AGATGAAGATGGTTTCAAGGATGTATCCGAGAAACATAGGCTTCCAATGTGGATGCCAAG 860
Query 876 TCTGAGTAGGGATGAACAATTAA-G-AGTCAA-CATAGATAAGATC-AGCTCATCTAGTG 931
| ||| | | | |||| | || | | | || || | | | | || | | ||||||
Sbjct 861 TATGACAATGAAGGAACG-TGAACGTA-TGAAGCAAA-AGAGG-TCTATCCCATCTAAC- 915
Query 932 AAAG-CATTGCTGTTACAAGATCAGGTCAGGTTTTGGTTGTCTGTT-CTTACGAGTTAGG 989
|||| |||||||||||||||| ||||||| ||||||||||||| || | ||||| |||||
Sbjct 916 AAAGGCATTGCTGTTACAAGAGCAGGTCAAGTTTTGGTTGTCT-TTACGTACGATTTAGG 974
Query 990 TAACTCTGAA-GTGCATAGGATGTTCCA-CGTGTACAAGAGAGATCCTAAAGATCTTGAC 1047
|| ||||||| || || ||||||||||| | |||||||||| ||||||||||||||||||
Sbjct 975 TACCTCTGAAAGT-CACAGGATGTTCCATC-TGTACAAGAGGGATCCTAAAGATCTTGAC 1032
Query 1048 CCGAAGACC-TACTTA-ACCCAGCTTCTTGAGGTACATTCTCTAGGTGATGAGGCCCTCT 1105
||||| ||| | | | |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1033 CCGAAAACCCT-CG-ACACCCGGCTTCTTGAGGTACATTCTCTAGGTGATGAGGCCCTCT 1090
Query 1106 T-TCTCGATTTGGGAACCACCGTGCCTGCTGACCATACCCGTGGTATTGAGCCTAACTCC 1164
| | | |||||||| | |||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1091 TCTAT-GATTTGGGTATTACCGTGCCTGCTGACCATACCCTTGGAATTGAGCCTAACTCC 1149
Query 1165 ATCTATTTCACCCGTGGTGATCGTATCCGTCACAGGAA-TCCTTCACGCCCCGACATCTG 1223
|| |||||||| |||| |||||||||| |||||| || | | || ||| ||||||| |
Sbjct 1150 ATTTATTTCACTCGTGATGATCGTATCTGTCACAATAAATTGT-CATGCCTCGACATCGG 1208
Query 1224 TGTCTTCAATCTTACAACAAAGACCATCAAACAC----A-G--C-CAC-AACTTAAACGT 1274
||||||||||||| ||||||||||| |||||| | | | | | | ||||| ||| |
Sbjct 1209 TGTCTTCAATCTTGCAACAAAGACCGTCAAACGCTTCCACGGTCTCTCCAACTTCAACTT 1268
Query 1275 CAAGGATGCCCGGTGGTTTCTTCCCTCTTGA 1305
||| ||||| | |||||||||||| ||||||
Sbjct 1269 CAACGATGCTCAGTGGTTTCTTCCTTCTTGA 1299
Score = 86.1 bits (46), Expect = 8e-16
Identities = 83/100 (83%), Gaps = 5/100 (5%)
Strand=Plus/Plus
Query 171 AATGGAGAGATCTACGCTCAAACGAACATCGAGTTTTCCGGATCCTGAGCCTGCTAAGGC 230
||||||||||||||||||||||||||||||||||||||| ||| |||| ||| | |||
Sbjct 57 AATGGAGAGATCTACGCTCAAACGAACATCGAGTTTTCCAGATATTGAGGCTGTTCAGGG 116
Query 231 CTTGCGTTCGACTTTGA-TCATGCGGCCAAAATTCGGATC 269
| | ||||||||||| | ||| ||||||| ||||||
Sbjct 117 GT-G--TTCGACTTTGAATT-TGCTGCCAAAAGCCGGATC 152
> AT1G27560.1 | Symbols: | pseudogene of F-box family protein-related
| chr1:9570855-9571987 REVERSE LENGTH=1133
Length=1133
Score = 970 bits (525), Expect = 0.0
Identities = 904/1078 (84%), Gaps = 62/1078 (6%)
Strand=Plus/Plus
Query 216 TGAGCCTGCTAAGGCCTTGCGTTCGACTTTGA-TCATGCGGCCAAAATTCGGATCACCAT 274
|||| ||||||||||| ||| ||||||||||| ||| |||||||||| |||||| ||||
Sbjct 21 TGAGTCTGCTAAGGCCATGCATTCGACTTTGATTCA-GCGGCCAAAAACCGGATCTCCAT 79
Query 275 TGCTGATGCTAAT-TACAGAAGAGGATGGTTGT--C-G---TA---TCTACAACCCAGAA 324
| |||||||| | | ||||| ||||||||||| | | || | ||||||||||||
Sbjct 80 TACTGATGCT-GTCTTCAGAAAAGGATGGTTGTCGCTGTAATAGTGTGTACAACCCAGAA 138
Query 325 GATGGTATGGTCTACGAGACGAAGAGTGACTTTTCAGGGTATCGATTCCTGGGAAGCTCC 384
||||||| ||| |||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 139 GATGGTAGGGTTTACGAGCCGAAGAGTGACTTTTCCGGGTATCGATTCCTGGGAAGCTCA 198
Query 385 GGTAAGTGGTTTCTGGTGGTAGATTCTC-AATTGAAACTCTATATTGTAGATGTCTTTAG 443
|||||||||||||||||||||||||||| || |||||||||||||| ||||||| |||||
Sbjct 199 GGTAAGTGGTTTCTGGTGGTAGATTCTCGAA-TGAAACTCTATATTATAGATGTATTTAG 257
Query 444 GGAGGAGAGGATCGATCTTCCACCACTAGAATCATTGAAAGGTAGCCTTTATAAGA-TTG 502
||| |||||||||| |||||||||||||||||||| || |||||||||| ||||| |||
Sbjct 258 CGAGAAGAGGATCGAACTTCCACCACTAGAATCATTTAAGGGTAGCCTTTTTAAGATTTG 317
Query 503 AGCGAGTA-GGAGAGAATAAAGTCAGGAATATA-TTAT--ACAGTGATTT-ATCTCCT-G 556
||| | | |||||| | || |||| | || || | || | || ||| || || | |
Sbjct 318 -GCGTG-ACGGAGAGGAGAATGTCAAGCATCTACTAATGGATGGT-TTTTCATATCGTCG 374
Query 557 GGG--ATCCTCATACTGCCGAAGATCTGAGAGGTCGTTTGTGGGTAGGCGACAACAAGGA 614
||| ||| |||| ||||||||||||||||||||||||||||||| | | |||| | ||
Sbjct 375 GGGAAATCTTCATGCTGCCGAAGATCTGAGAGGTCGTTTGTGGGTTGACAACAAGGATGA 434
Query 615 AGACTACGTTGTTGTGTGGCATTTTGAAAT-GAACGACTTTCTAGGGTTTTGCAAGAAAG 673
| ||||||||| ||| ||||| |||||||| | | | ||||||||| |||||| || ||
Sbjct 435 AAACTACGTTGCTGTCTGGCAATTTGAAATGGGCCCA-TTTCTAGGG-TTTGCAGGACAG 492
Query 674 GGGATGATCATTACCGCGAGA-TCTTAACA-AGGAC-CG-GTGTTC-GCAGGGAGTTACG 728
|||||||| |||||||||||| || |||| | | | || | |||| | |||||||||||
Sbjct 493 GGGATGATTATTACCGCGAGATTC-CAACACA-G-CTCGAG-GTTCAG-AGGGAGTTACG 547
Query 729 CGGTGTAAAAGATATGGTACTTAAAGGTTACAGCCTTTACGTCCTTGCCATCCGTGACTT 788
||| || | |||||||||||||||||||||| ||||||||| |||||| |||||| ||
Sbjct 548 AGGTTTATACGATATGGTACTTAAAGGTTACAATCTTTACGTCTTTGCCACCCGTGAGTT 607
Query 789 CATTCGACACTTGGATTTGTCTGGACATGGTGAAGATGGTATCAAGGATGTGTCCGAGAA 848
||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||
Sbjct 608 CATTCGACACTTGGATTTGTCTGGACAAGATGAAGATGGTTTCAAGGATGTGTCCGAGAA 667
Query 849 CCATAAGCTTCCAATGTGGATGCCAAGTCTGAGTAGGGATGAACAAT-TAAG-AGTCAA- 905
|||| ||||||||||||||||||| |||||| || | | |||| | ||| || ||
Sbjct 668 ACATAGGCTTCCAATGTGGATGCCACGTCTGACTATGAAGGAAC-GTGAAAGTAG-GAAC 725
Query 906 C-ATAGATAAGAT-CAGCTCATCTAGTGAAA-GCATTGCTGTTACAAGATCAGGTCAGGT 962
| || | ||| | | | |||||| ||| ||||||||||||||||| ||||||| ||
Sbjct 726 CAATTG--AAG-TGTATCCCATCTA-ACAAAGGCATTGCTGTTACAAGAGCAGGTCAAGT 781
Query 963 TTTGGTTGTCTGTTC-TTACGAGTTAGGTAACTCTG-AAGTGCATAGGATGTTCCACGTG 1020
|||| |||||| | | || ||| ||||||| ||||| |||| ||||||||||||| ||
Sbjct 782 TTTGCTTGTCTATACGTT-CGATTTAGGTACCTCTGAAAGT-CATAGGATGTTCCGTTTG 839
Query 1021 TACAAGAGAGATCCTAAAGATCTTGACCCGAAGA-CCTACTTA-ACCCAGCTTCTTGAGG 1078
|||||||| ||||||||||||||||||||||| | ||| | | ||| |||||||||||
Sbjct 840 TACAAGAGGGATCCTAAAGATCTTGACCCGAAAACCCT-C-GACACCTGGCTTCTTGAGG 897
Query 1079 TACATTCTCTAGGTGATGAGGCCCTCTTTCTCGATTTGGGAACCACCGTGCCTGCTGACC 1138
| ||||||||||||||||||||||||||||| |||||||| | || |||||||||||||
Sbjct 898 TGCATTCTCTAGGTGATGAGGCCCTCTTTCTTGATTTGGGTATTACTGTGCCTGCTGACC 957
Query 1139 ATACCCGTGGTATTGAGCCTAACTCCATCTATTTCACCCGTGGTGATCGTATCCGTCACA 1198
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 958 ATACCCTTGGTATTGAGCCTAACTCCATTTATTTCACCCGTGGTGATCGTATCCGTCACA 1017
Query 1199 G-GAATCCTTCACGCCCCGACATCTGTGTCTTCAATCTTACAACAAAGACCATCAAAC 1255
||||| | || ||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1018 AAGAATCGT-CATGCCTCGACATCTGTGTCTTCAATCTTATAACAAAGACCATCAAAC 1074
> AT1G27580.1 | Symbols: | Protein of unknown function (DUF295)
| chr1:9589933-9591075 REVERSE LENGTH=1095
Length=1095
Score = 734 bits (397), Expect = 0.0
Identities = 752/914 (82%), Gaps = 62/914 (7%)
Strand=Plus/Plus
Query 432 AGATGTCTTTAGGGAGGAGAGGATCGATCTTCCACCACTAGAATCATTGAAAGGTAGCC- 490
|||||| ||||| ||| ||||||||||||||||||||||||||||||| || |||||||
Sbjct 204 AGATGTATTTAGCGAGAAGAGGATCGATCTTCCACCACTAGAATCATTTAAGGGTAGCCA 263
Query 491 TTTATAAGA-TTGAGCGAGTAGGAGAGAATAAAGTC-AGGA-AT-AT-AT-TAT-A-CAG 542
||| ||||| ||| ||| | ||||||| | || ||| || | || | || || | ||
Sbjct 264 TTT-TAAGATTTG-GCGTGAAGGAGAGGAGAATGTCAAGCATATGCTAATGGATGATGAG 321
Query 543 TGATTTATCTCCTG-GGGA--TCCTCATACTGCCGAAGATCTGAGAGGTCGTTTGTGGGT 599
||| || || || | | ||||||| |||||||||||||||||||||||||||||||
Sbjct 322 -GATCCATTTCGTGATGAATTTCCTCATGCTGCCGAAGATCTGAGAGGTCGTTTGTGGGT 380
Query 600 AGGCGACAACAA-GGAAGACTACGTTGTTGTGTGGCATTTTGAAATGAACG-ACTTTCTA 657
| |||||| || |||| ||||||||||||||||||| ||||||||| || | ||||||
Sbjct 381 TGACGACAAGAATGGAA-ACTACGTTGTTGTGTGGCAGTTTGAAATGTACCCA-TTTCTA 438
Query 658 GGGTTTTGCAAGAAAGGGGATGATCATTACCGCGAGAT-CTTAACA-AGGACCG-GTGTT 714
|||||||||| || |||||||||||||||||||||||| | |||| || | | | |||
Sbjct 439 GGGTTTTGCAGGACAGGGGATGATCATTACCGCGAGATTCC-AACAGAGCTC-GAG-GTT 495
Query 715 C-GCAGGGAGTTACGCGGTGTAAAAGATATGGTACTTAAAGGTTACAGCCTTTACGTCCT 773
| | ||||||||||| ||| |||| ||||||||||| |||||||||| ||||||||| |
Sbjct 496 CAG-AGGGAGTTACGAGGTTTAAACGATATGGTACTGAAAGGTTACAATCTTTACGTC-T 553
Query 774 -TGCCATCCGTGACTTCATTCGACACTTGGATTTGTCTGGACATGGTGAAGATGGTATCA 832
||||| |||||| |||||||||||||| |||||||||||||| | |||||||||| |||
Sbjct 554 ATGCCACCCGTGAGTTCATTCGACACTTAGATTTGTCTGGACAAGATGAAGATGGTTTCA 613
Query 833 AGGATGTGTCCGAGAACCATAAGCTTCCAATGTGGATGCCAAGTCTGAGTAGGGATGAAC 892
||||||| |||||||| |||| |||||||||||||||||||||| ||| | | | ||||
Sbjct 614 AGGATGTATCCGAGAAACATAGGCTTCCAATGTGGATGCCAAGTATGACAATGAAGGAAC 673
Query 893 AATTAA-G-AGTCAA-CATAGATAAGATC-AGCTCATCTAGTGAAAG-CATTGCTGTTAC 947
| || | | | || || | | | | || | | |||||| |||| ||||||||||||
Sbjct 674 G-TGAACGTA-TGAAGCAAA-AGAGG-TCTATCCCATCTAAC-AAAGGCATTGCTGTTAC 728
Query 948 AAGATCAGGTCAGGTTTTGGTTGTCTGTT-CTTACGAGTTAGGTAACTCTGAA-GTGCAT 1005
|||| ||||||| ||||||||||||| || | ||||| ||||||| ||||||| || ||
Sbjct 729 AAGAGCAGGTCAAGTTTTGGTTGTCT-TTACGTACGATTTAGGTACCTCTGAAAGT-CAC 786
Query 1006 AGGATGTTCCA-CGTGTACAAGAGAGATCCTAAAGATCTTGACCCGAAGACC-TACTTA- 1062
||||||||||| | |||||||||| ||||||||||||||||||||||| ||| | | |
Sbjct 787 AGGATGTTCCATC-TGTACAAGAGGGATCCTAAAGATCTTGACCCGAAAACCCT-CG-AC 843
Query 1063 ACCCAGCTTCTTGAGGTACATTCTCTAGGTGATGAGGCCCTCTT-TCTCGATTTGGGAAC 1121
|||| ||||||||||||||||||||||||||||||||||||||| | | |||||||| |
Sbjct 844 ACCCGGCTTCTTGAGGTACATTCTCTAGGTGATGAGGCCCTCTTCTAT-GATTTGGGTAT 902
Query 1122 CACCGTGCCTGCTGACCATACCCGTGGTATTGAGCCTAACTCCATCTATTTCACCCGTGG 1181
|||||||||||||||||||||| ||| ||||||||||||||||| |||||||| ||||
Sbjct 903 TACCGTGCCTGCTGACCATACCCTTGGAATTGAGCCTAACTCCATTTATTTCACTCGTGA 962
Query 1182 TGATCGTATCCGTCACAGGAA-TCCTTCACGCCCCGACATCTGTGTCTTCAATCTTACAA 1240
|||||||||| |||||| || | | || ||| ||||||| |||||||||||||| |||
Sbjct 963 TGATCGTATCTGTCACAATAAATTGT-CATGCCTCGACATCGGTGTCTTCAATCTTGCAA 1021
Query 1241 CAAAGACCATCAAACAC----A-G--C-CAC-AACTTAAACGTCAAGGATGCCCGGTGGT 1291
|||||||| |||||| | | | | | | ||||| ||| |||| ||||| | |||||
Sbjct 1022 CAAAGACCGTCAAACGCTTCCACGGTCTCTCCAACTTCAACTTCAACGATGCTCAGTGGT 1081
Query 1292 TTCTTCCCTCTTGA 1305
||||||| ||||||
Sbjct 1082 TTCTTCCTTCTTGA 1095
Score = 137 bits (74), Expect = 2e-31
Identities = 145/176 (82%), Gaps = 17/176 (10%)
Strand=Plus/Plus
Query 221 CTGCTAAGGCCT-TGCGTTCGACTTTGA-TCATGCGGCCAAAATTCGGATCACCATTGCT 278
||||||||| || ||||||||| ||||| ||| |||||||||| | |||| ||||||||
Sbjct 32 CTGCTAAGG-CTCTGCGTTCGAATTTGATTCA-GCGGCCAAAAGCCAGATCTCCATTGCT 89
Query 279 GATGCTAAT-TACAGAAGAGGATGGTTGTC---G---TA---TCTACAACCCAGA-AGAT 327
|||||| | | ||||| |||||||||||| | || | ||||||||| | | ||
Sbjct 90 GATGCT-TTCTGCAGAAAAGGATGGTTGTCGTAGTAATAGTGTGTACAACCCATACA-AT 147
Query 328 GGTATGGTCTACGAGACGAAGAGTGACTTTTCAGGGTATCGATTCCTGGGAAGCTC 383
| || ||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 148 GATAGGGTTTACGAGACGAAGAGTGACTTTTCAGGGTATCGATTCCTGGGAAACTC 203
> AT1G27550.1 | Symbols: | F-box family protein | chr1:9568813-9569330
REVERSE LENGTH=378
Length=378
Score = 322 bits (174), Expect = 6e-87
Identities = 207/222 (93%), Gaps = 5/222 (2%)
Strand=Plus/Plus
Query 430 GTAGATGTCTTTAGGGAGGAGAGGATCGATCTTCCACCACTAGAATCATTGAAAGGTAGC 489
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 143 GTA-ATGTCTTTAGCGAGGAGAGGATCGATCTTCCACCACTAGAATCATTGAAAGGTAGC 201
Query 490 CTTTATAA-GATTGAGCGAGTAGGAGAGAATAAAGTCAGGAATATATTA-TACAGTGATT 547
|||| ||| ||||||||||||||||||| ||||||||||| |||||||| | ||| ||||
Sbjct 202 CTTT-TAAAGATTGAGCGAGTAGGAGAGGATAAAGTCAGGGATATATTAAT-CAGCGATT 259
Query 548 TATCTCCTGGGGATCCTCATACTGCCGAAGATCTGAGAGGTCGTTTGTGGGTAGGCGACA 607
|||| | ||||| ||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 260 TATCGCGTGGGGCTCCTCATACTGCCGAGGATCTGAGAGGCCGTTTGTGGGTAGGCGACA 319
Query 608 ACAAGGAAGACTACGTTGTTGTGTGGCATTTTGAAATGAACG 649
| ||||||||||||||||||||||||||||||||||||||||
Sbjct 320 AGAAGGAAGACTACGTTGTTGTGTGGCATTTTGAAATGAACG 361
> AT2G24080.1 | Symbols: | Protein of unknown function (DUF295)
| chr2:10237604-10238779 REVERSE LENGTH=1125
Length=1125
Score = 211 bits (114), Expect = 1e-53
Identities = 213/261 (82%), Gaps = 6/261 (2%)
Strand=Plus/Plus
Query 256 CCAAAATTCGGATCACCATTGCTGATGCTAAT-TACAGAAGAGGATGGTTGTCGTATCTA 314
|||||| ||||||| || |||||| || | | | ||||||||| ||||| |||| | ||
Sbjct 106 CCAAAACTCGGATCTCCGTTGCTGTTG-TTGTCTCCAGAAGAGGGTGGTTTTCGTCTGTA 164
Query 315 CAACCCAGAAGATGGTATGGTCTACGAGACGAAGAGTGACTTTTCAGGGTATCGATTCCT 374
||| ||||| || | || | | ||||||||||||||||||||||||||||||||||||||
Sbjct 165 CAAGCCAGACGAAGATAAGTTTTACGAGACGAAGAGTGACTTTTCAGGGTATCGATTCCT 224
Query 375 GGGAAGCTCCGGTAAGTGGTTTCTGGTGGTAGATTCTCA-ATTGAAACTCTATATTGTAG 433
| |||||| ||||||||||| || |||||||||||| | || | | |||||||| |||
Sbjct 225 AGCAAGCTCGGGTAAGTGGTTCCTAGTGGTAGATTCT-AGATGGGATCTCTATATCATAG 283
Query 434 ATGTCTTTAGGGAGGAGAGGATC-GATCTTCCACCACTAGAATCATTGAAAGGTAGCCTT 492
|||| ||||| || ||||||||| | ||||||||| ||||| ||| | ||| |||||
Sbjct 284 ATGTGTTTAGCGATGAGAGGATCAG-TCTTCCACCTCTAGAGTCAACCCAGGGTGGCCTT 342
Query 493 TATAAGATTGAGCGAGTAGGA 513
|||| | ||||||||| ||||
Sbjct 343 TATATGGTTGAGCGAGAAGGA 363
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64206497055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5