BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313509
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28040.1 | Symbols: | RING/U-box superfamily protein | chr1... 542 3e-153
AT1G28020.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 139 4e-32
> AT1G28040.1 | Symbols: | RING/U-box superfamily protein | chr1:9773580-9775481
REVERSE LENGTH=1471
Length=1471
Score = 542 bits (293), Expect = 3e-153
Identities = 471/553 (85%), Gaps = 28/553 (5%)
Strand=Plus/Plus
Query 75 AGGATTCAATCTCCACTGCAACAACCTCAATAAGACAGTCCTAGAGCTTCCTATGTCCGG 134
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 520 AGGATTCAATCTCCACTGCAACAACCTCGATAAGACAGTCCTAGAGCTTCCTATGTCCGG 579
Query 135 AACATTTCTTGTTGATAGAA-TCGACTACTCAAA-GCAGCAAATTTCTATCAGCGACCCT 192
|||||||||||| ||| ||| || ||||| |||| |||||| ||||||||||||||||||
Sbjct 580 AACATTTCTTGTCGAT-GAAATCAACTAC-CAAAAGCAGCAGATTTCTATCAGCGACCCT 637
Query 193 GAAGACTGTATGGTCAAAAGGCTTTTAACCTTCAATACTTCAGGATCTCCTTTCTCTAAT 252
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 638 GAAAACTGTATGGTTAAAAGGCTTTTAACCTTCAATACTTCAGGATCTCCTTTCTCTTAT 697
Query 253 GGCTTGAGTACTGTCTATTACACGTTCTTGACCTGTCCGAATGAGGTCGTGAGGCTG-TC 311
||||| ||| | |||| |||||||||||||||||||||||||||||||||| | | |
Sbjct 698 GGCTTCAGT--T-TCTACTACACGTTCTTGACCTGTCCGAATGAGGTCGTGATACCGGT- 753
Query 312 TTGGTATCCGC-G-C-ATCCGTTGCCTAAGCAATTCTACCTCCACCTTCTTTTCCACGTC 368
||||| || | | | |||| |||||||||||||||||||||| ||||||| |||||||
Sbjct 754 TTGGTCTCTGATGTCCATCCCTTGCCTAAGCAATTCTACCTCCTCCTTCTTCGCCACGTC 813
Query 369 TAATATGTCACTTGCAAA-TTCAATGCTGCCTTCTTGCCAGATCGTGAAGAG-ACTAG-C 425
|||| || | || |||| || ||| ||||||||| ||||| ||||| || |||| |
Sbjct 814 TAATTTGACTTTTTCAAAATTGT-TGCCGCCTTCTTGTCAGATTGTGAA-AGGACTATAC 871
Query 426 TGTTCCGGTA-AGCGTGTTTTATGAAA-ATGTGCTAACTCATGAGAAAGGATTCTCTG-A 482
||||| || | ||| | ||| ||| ||||| ||||| | || ||||| |||||| |
Sbjct 872 -GTTCCTGTTGAT-GTGATATAT-AAAGATGTGATAACTGAAGAAAAAGGGTTCTCTACA 928
Query 483 TTGGA-TCAACTATGTAAACCTTTTGCTGGAATGGAGCTCGCCAAATTGCACG-GGTTGT 540
|| | || || |||| | ||| |||||||||||||||| ||||||| | ||||||
Sbjct 929 GTGCCCTGG-CT-TGGAAACGTCTTGTTGGAATGGAGCTCGCCGAATTGCA-GAGGTTGT 985
Query 541 GAAAAGAAGTCCTTGAGATGTGGTTTCAAGAACAAGGCCTCCCTCGAAGTCAAATGCTTC 600
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 986 GAAAAGGAGTCCTTGAGATGTGGTTTCAAGAACAAGGCCTCCCTCGAAGTCAAATACTTG 1045
Query 601 GCTGATCCACCCG 613
|||||||||||||
Sbjct 1046 GCTGATCCACCCG 1058
Score = 462 bits (250), Expect = 2e-129
Identities = 319/351 (91%), Gaps = 9/351 (3%)
Strand=Plus/Plus
Query 631 ACTTGTATTG-T--TATGCC-CATTTGCAATTCAGAGAGGTTTGTCTTTCAGAGAAGACA 686
|||||||||| | ||| || ||||| |||||| |||||||||||| ||||||||||||
Sbjct 1124 ACTTGTATTGCTGCTAT-CCGCATTTACAATTCCGAGAGGTTTGTCAATCAGAGAAGACA 1182
Query 687 AAATGCTGCTATCGCAGACA-CAGCCCTAACGCAGCAGCCAAGAGGGGATGTGGTCACTA 745
|||||| ||||| ||| || | | | |||||| || ||| |||||| |||||||||||
Sbjct 1183 AAATGCAGCTATTACAGCCAGAAACAC-AACGCAACAACCACGAGGGGTTGTGGTCACTA 1241
Query 746 CAGGTCTTGACCAGTCTACAATAGAGTCATACAAGAAAGTGGAGTTAGGAGAAAGTAGAA 805
||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1242 CAGGTCTTGACCAATCTACAATAGAATCATACAAGAAAGTGGAGTTGGGAGAAAGTAGAA 1301
Query 806 GGCTTCCGGGTACTAATGGTATCATCTGTCCCATTTGTTTATCAGAATATGCTAGCAAAG 865
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 GGCTTCCAGGTACTAATGGTATCATCTGTCCCATTTGTTTATCAGAATATGCTAGCAAAG 1361
Query 866 AGACTGTACGGTGCATGCCAGAATGTGAACACTGTTTCCACGTCGAATGTATCGATGCA- 924
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
Sbjct 1362 AGACTGTACGGTGCATGCCAGAATGTGATCACTGTTTCCACGTCCAATGTATCGATG-AG 1420
Query 925 TGGCTCAAGATTCATAATTCATGTCCTGTTTGTCGTAACTCACGCTCGTAA 975
|||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1421 TGGCTCAAGATTCATAGTTCATGTCCTGTTTGTCGCAACTCACGCTCGTAA 1471
> AT1G28020.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:9768395-9771157 REVERSE LENGTH=1839
Length=1839
Score = 139 bits (75), Expect = 4e-32
Identities = 85/90 (94%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 821 ATGGTATCATCTGTCCCATTTGTTTATCAGAATATGCTAGCAAAGAGACTGTACGGTGCA 880
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 ATGGTATCATCTTTCCCATTTGTTTATCAGAATATGCTAGCAAAGAGACCGTACGGTGCA 60
Query 881 TGCCAGAATGTGAACACTGTTTCCACGTCG 910
| ||||||||||| ||||||||||| ||||
Sbjct 61 TACCAGAATGTGATCACTGTTTCCATGTCG 90
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47722439650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5