BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313512
Length=891
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28080.1 | Symbols: | RING finger protein | chr1:9789826-97... 1260 0.0
> AT1G28080.1 | Symbols: | RING finger protein | chr1:9789826-9791546
FORWARD LENGTH=1504
Length=1504
Score = 1260 bits (682), Expect = 0.0
Identities = 825/892 (92%), Gaps = 17/892 (2%)
Strand=Plus/Plus
Query 1 ATGACCAATATGGTTCCTCTTGAATCCTCAACGCTTTTCGGCGTTTACGGCGGTTTCACG 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGACCAATATGGTTCCTCTTGAATCCTCAACGCTTTTCGGTGTTTACGGCGGTTTCACG 60
Query 61 GACGCGATGATGATGAGAGAAACATCCACAAACAATCAAGATCCTAGCGGAGATACATGC 120
||| |||||||||||||||||||| | || ||||||||||||||||| |||||||||||
Sbjct 61 GACTCGATGATGATGAGAGAAACAACTACCAACAATCAAGATCCTAGTGGAGATACATGT 120
Query 121 TCCGTATCCGATCCAACAGCAGCTTCTACTGATTATTATAACATCTCTTCTTCTCCAGTG 180
||||| ||||||||| || ||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 TCCGTCTCCGATCCAGCACCAGGTTCTACTGATTATTATAACATCTCTTCTTCTCCAGTG 180
Query 181 AAAGACGATGGAACGGCCGCAAAGAACGACGTCGTTTGTTCTATTAACGTAGAAGATAAT 240
|||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 AAAGACGACGGAACGGCCCCAAAGAACGACGTCGTTTGTTCTATTAACGTAGACGATAAT 240
Query 241 AAAGACAAATCTTGGCTCCGTTTAGGTATAGGCCCTGAGGAGAGCAACAATAACACGGGG 300
|||||||||||||||||||| ||||||||||||||||| | ||| ||| | | ||
Sbjct 241 AAAGACAAATCTTGGCTCCGCTTAGGTATAGGCCCTGA-G-GAG-AAC-A-CGGA-TGGC 294
Query 301 TCGTATAAGCTCCAACGTTGTTGTAGCAAAAACGGAAGTGGAAGAGAGAATTCATTAGAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 TCGTATAAGCTCCAACGTTGTTGTAGCAAAAACGGAAGTGGAAGAGAGAATTCATTAGAG 354
Query 361 CTCAGCTTGTTCTCTTCATCCTCAACCGCGGCAGGAGCGGTTAGTAATAGTGTAGATCAC 420
|| |||||||||||||||||||||| | | |||||||||| |||| ||||||||
Sbjct 355 CTGAGCTTGTTCTCTTCATCCTCAA---C--C----GCGGTTAGTAGTAGTATAGATCAC 405
Query 421 CTACCGACGCAACCGCCGCAGCTACCATATCATCATGATCAGTTATTGACGATGCGTGGA 480
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 406 CTACCGACGCAACCGTTGCAGCTGCCATATCATCATGATCAGTTATTGACGATGCGTGGA 465
Query 481 CCGTCATTGGTTTATAATCACCAATTAATTAGGTCTCAAACGTTATTAAATCGCGGCTTT 540
||||| |||||||| || ||||||||||| | | ||||||||||||||||||||||||||
Sbjct 466 CCGTCGTTGGTTTACAACCACCAATTAATGAAGCCTCAAACGTTATTAAATCGCGGCTTT 525
Query 541 TCGTTTCCATCTTCAAAGCCGTGGATACCGCAATATACGGCACCGTTTAGACCGTCATCA 600
||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||
Sbjct 526 TCGTTTCCATCTTCAAAGCCGTGGATACCTCAATATATGGCGCCGTTTAGACCGTCATCA 585
Query 601 TTGAGTGACCGTGACGTCACTAACAATAACAGTGTTTCAAAG-AGTTGTTGTGTGGATGA 659
||||||||||||||||||||||| ||||| ||| |||| ||| || ||||||||||||||
Sbjct 586 TTGAGTGACCGTGACGTCACTAATAATAATAGTCTTTC-AAGAAGCTGTTGTGTGGATGA 644
Query 660 GGGAGGAGCTGGACCAAGTTCCGAGTTTAGGGTTCTTGATCCTCCAAGAAGACCACATTC 719
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 645 GGGAGGAGCTGGACCAAGCTCTGAGTTTAGGGTTCTTGATCCTCCAAGAAGACCACATTC 704
Query 720 TGGTCTTTGGTTTCTTCTTCAAGCTTCACAATTTCAGGAAAAGGAACCGTTCCTGCCTCA 779
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 705 TGGTCTTTGGTTTCTTCTTCAAGCTTCACAATTTCAGGAAAGGGAACCGTTCTTGCCTCA 764
Query 780 AGTGAACAAAAGCTACTTGAGAATCAAAGATGGGAGAATCACCGTTAGATTGCTAATTAA 839
||| || ||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 765 AGTAAATAAAAGCTACTTGAGAATCAAAGATGGGAGAATCACTGTTAGATTGTTAATTAA 824
Query 840 GTACCTTATGAAGAAACTTGACTTGGATAGCGAATCTGAGGTAAATATATAA 891
|||||| |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 825 GTACCTCATGAAGAAACTTGAATTGGATAGCGAATCTGAGGTAAATATCTAA 876
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43502771302
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5