BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313537
Length=246
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28335.1 | Symbols: LCR31 | low-molecular-weight cysteine-ri... 333 4e-91
> AT1G28335.1 | Symbols: LCR31 | low-molecular-weight cysteine-rich
31 | chr1:9937001-9937733 FORWARD LENGTH=477
Length=477
Score = 333 bits (180), Expect = 4e-91
Identities = 222/242 (92%), Gaps = 4/242 (2%)
Strand=Plus/Plus
Query 7 AATCTCTCTCAAGTCTCGGTAGCCGTTCTACTTATCTTCTCCATTCT-GATACTAGGAAT 65
||| ||||||||||||||||||||||||||||||||||||||||||| | | |||||||
Sbjct 42 AATGTCTCTCAAGTCTCGGTAGCCGTTCTACTTATCTTCTCCATTCTTG-TGTTAGGAAT 100
Query 66 AGGAGTCCAAGGAAAAGTACCATGTCTTAAGCGTATATTTAACAAAAATAATACGTGTGC 125
||||||||||||||||||||| |||||| |||||| ||||| ||||||||||||||| |
Sbjct 101 AGGAGTCCAAGGAAAAGTACCGTGTCTTTCGCGTATGTTTAATAAAAATAATACGTGTTC 160
Query 126 TTTCCTAAGATGTGAAGCTAATTGTGCACGGAAATATCAAGGATATGGTGATTGCCGTCC 185
||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||
Sbjct 161 TTTCCTAAGATGTGAAGCTAATTGTGCACGGAAGTATAAAGGGTATGGTGATTGCCGTCC 220
Query 186 AGGAGACAGACCACACGACAAACGAGACTCCGT-GTTTTGTTACTGCAATTATCCTTGTT 244
||||||||| |||||||||||| |||||| || |||||||| |||||||||||||||||
Sbjct 221 AGGAGACAGGCCACACGACAAAAAAGACTC-GTTGTTTTGTTTCTGCAATTATCCTTGTT 279
Query 245 AA 246
||
Sbjct 280 AA 281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11159440278
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5