BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg313543

Length=288
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G28395.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   444    2e-124


> AT1G28395.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; 
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT2G33847.2); 
Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:9969536-9971458 
REVERSE LENGTH=635
Length=635

 Score =  444 bits (240),  Expect = 2e-124
 Identities = 272/288 (94%), Gaps = 0/288 (0%)
 Strand=Plus/Plus

Query  1    ATGTCCGCCGCAAGGTCCGTCTTCCGCTCCGCCGCAAGCCGAGCATCGGCCGCCGCGTCT  60
            |||||||||||||||||||| ||||||||||||||||||||||||||| || |||| | |
Sbjct  26   ATGTCCGCCGCAAGGTCCGTGTTCCGCTCCGCCGCAAGCCGAGCATCGTCCACCGCATTT  85

Query  61   AGATTCTCCACCGGACCCAAGCCTATGCCTTCATCTGCACGGTCCGCGTTTCGGATGCCT  120
            ||||||||| ||||||||||||||||||| ||||| |||||| |||||||||||||||||
Sbjct  86   AGATTCTCCGCCGGACCCAAGCCTATGCCGTCATCGGCACGGACCGCGTTTCGGATGCCT  145

Query  121  AAACAGAGCCCTCTTTCAAATCGCATTTTCAGATCTCCGGTAGAACTAAGCTGTTGCGTG  180
            |||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  146  AAACAGAGTCCTCTAACAAATCGCATTTTCAGATCTCCGGTAGAACTAAGCTGTTGCGTG  205

Query  181  GAGACGATGCTCCCGTACCATACTGCCACTGCTTCCGCTTTGCTCAATTCGATGCTCTCT  240
            |||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| 
Sbjct  206  GAGACGATGCTCCCTTACCACACTGCCACTGCTTCCGCTTTGCTCAATTCAATGCTCTCA  265

Query  241  GTTTCACGCCGTGGTTGGATCGTTGATGGGCTAGACGAGACTAGATGA  288
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  266  GTTTCACGCCGTGGTTGGATCGTTGATGGGCTAGACGAGACTAGATGA  313



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13270685736


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5