BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313572
Length=1026
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29040.1 | Symbols: | unknown protein; LOCATED IN: chloropl... 691 0.0
AT1G29041.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 651 0.0
AT1G34044.1 | Symbols: | unknown pseudogene | chr1:12386219-12... 285 6e-76
> AT1G29040.1 | Symbols: | unknown protein; LOCATED IN: chloroplast,
vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved
hypothetical protein CHP02058 (InterPro:IPR011719); Has
344 Blast hits to 344 proteins in 122 species: Archae - 2;
Bacteria - 227; Metazoa - 0; Fungi - 0; Plants - 32; Viruses
- 0; Other Eukaryotes - 83 (source: NCBI BLink). | chr1:10134069-10136124
FORWARD LENGTH=1592
Length=1592
Score = 691 bits (374), Expect = 0.0
Identities = 561/643 (87%), Gaps = 45/643 (7%)
Strand=Plus/Plus
Query 405 TCCGCGGGAAAGTTTTGCCTCCTTAAACCTA-AAA-AG-TTTTATAGC-TAAGCATAAGT 460
|||||||||||||||| |||||||||||||| ||| || | ||| ||| |||||| ||
Sbjct 837 TCCGCGGGAAAGTTTTCCCTCCTTAAACCTAGAAATAGCTCTTA-AGCATAAGCA-AA-- 892
Query 461 TTTATATACATGTGAAACCaaaaaaaaaaaaaaaaaCTTGCAGA--AAAATGAAAGGGAA 518
| |||||||||||| | |||||||||||| |||||| ||||||||||||||
Sbjct 893 ---ACATACATGTGAAA-C-----AAAAAAAAAAAA--TGCAGAGGAAAATGAAAGGGAA 941
Query 519 TAAG---AAGATTAGTTCGATTTTCG-AGAATCGCCATGTATCTGCGTCTCAGGAGGTTT 574
||| || ||| |||||||||||| || || || |||||||||||||||||||| |||
Sbjct 942 AAAGAAAAACATTGGTTCGATTTTCGAAG-ATTGCAATGTATCTGCGTCTCAGGAGATTT 1000
Query 575 ATCTACAGCGATGCGGCTTCGCCGTACCAGGTCAACCACCTCCAGATTCCGATCCTTCCG 634
|||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1001 ATCTACAGCGATGCGGTTTTGCCGTACCAGGTCAACCACCTCCAGATTCCGATCCCTCCG 1060
Query 635 CCGGAGTCTCGCCACCACCGTTAAACGACGGAATTGCATCTCAGCGTTCGTCCGATGATT 694
||||||||| || ||||||||||||||||||||| ||| ||||||||| |||| |||||
Sbjct 1061 TCGGAGTCTCACCGCCACCGTTAAACGACGGAATTCCATATCAGCGTTCATCCGGTGATT 1120
Query 695 CGG--A--G--ACGGATAGTGTAATCGGTTCGGGTCACTATGCGGTGGAGAGTCAGGCGA 748
||| | | | ||||||||||||||| |||||| || |||||||||||||||||||||
Sbjct 1121 CGGATACGGATAAGGATAGTGTAATCGGCTCGGGTAACGATGCGGTGGAGAGTCAGGCGA 1180
Query 749 TTAGATTAGTCTCTCCGGAGGAAAGCGTGGACACCGTTGATTTAGAGGAAGATGTTGCAG 808
|| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 TTCGATGCGTCACTCCGGAGGAAAGCGTGGACACCGTTGATTTAGAGGAAGATGTTGCAG 1240
Query 809 ATCC-AGCGGTTGAGGTTTTGGCGGAGGATAAGCAGAGTGATGTTCCTCTGGAATCTGCA 867
|||| | |||||||||||| ||||||| | | ||||||||||||||||||||||||||||
Sbjct 1241 ATCCGA-CGGTTGAGGTTTCGGCGGAG-A-A-GCAGAGTGATGTTCCTCTGGAATCTGCA 1296
Query 868 GCGAAG--G-AAGATAGAGGAAAGAGACTTAAGATTCCTTTGAGAGATGTTGTAAAAGCC 924
|||||| | ||| | ||||||||| ||||||||||||||| || || ||||| ||||||
Sbjct 1297 GCGAAGAAGGAAGGTGGAGGAAAGAAACTTAAGATTCCTTTAAGGGAAGTTGTGAAAGCC 1356
Query 925 ATTGTTATGAATTCGAAGAA-CACAGAGGAAGAAGAAGCTGACAAAGAGATTAAGAAGAT 983
|| ||||||||||||| ||| ||||||||||||||||| ||||||||||| |||||||
Sbjct 1357 ATAGTTATGAATTCGA-GAAACACAGAGGAAGAAGAAG---ACAAAGAGATTGAGAAGAT 1412
Query 984 GAGCTGTGTGCAAATCCTCTTGCAAAAGGGATTCAAATTTTAA 1026
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1413 GAGCTGTGTGCAAATCCTCTTGCAAAAGGGATTCAAATTTTAA 1455
Score = 320 bits (173), Expect = 2e-86
Identities = 248/282 (88%), Gaps = 14/282 (5%)
Strand=Plus/Plus
Query 1 ATGTCTCTTTCGTTGATTTCTGGTTCGATTCTTATCTGCCCCGA---TC-T-T-CGTCAA 54
||||||||||||||||||||||||||||||| ||||||| | || || | | ||||||
Sbjct 52 ATGTCTCTTTCGTTGATTTCTGGTTCGATTCATATCTGCGCTGAGCTTCGTCTCCGTCAA 111
Query 55 TCTCCGTCGTATTTGAGAATCTCTTCTTCGCCGCC-ACTTTCTCTCTCTTCCCGTAGTAA 113
|||||||||| ||| | |||||||||||||| ||| | || ||||||||||||||||||
Sbjct 112 TCTCCGTCGTGTTTAACAATCTCTTCTTCGCGGCCAAAATT-TCTCTCTTCCCGTAGTAA 170
Query 114 GTC--TTCTTCTCCCCACCAGTTTT-CTCAAATCTCACGCCCGATCAAAGTCACCGCGAG 170
| | ||| |||| | |||| |||| |||| |||||||| ||||||||||||| ||||||
Sbjct 171 G-CAGTTC-TCTCTCGACCA-TTTTCCTCAGATCTCACGTCCGATCAAAGTCATCGCGAG 227
Query 171 AAGCGCCATGGAGACGACGGCGGAGACCATTTCCGGCGGTGTTCCCAACAATACAATGAA 230
||||||||||||||||||||||||||| ||| ||||||||||||||||||| || |||||
Sbjct 228 AAGCGCCATGGAGACGACGGCGGAGACAATTACCGGCGGTGTTCCCAACAACACGATGAA 287
Query 231 GCTATTGTTCGTTGAGATGGGTGTCGGTTATGATCAGCACGG 272
| |||||||||||||||||||||||||||| |||||||||||
Sbjct 288 GTTATTGTTCGTTGAGATGGGTGTCGGTTACGATCAGCACGG 329
Score = 206 bits (111), Expect = 5e-52
Identities = 113/114 (99%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 292 GGTTCGATTCCTGGAGTTTCATTTGGAGAAATGAAGTTGCAGATTAAGCTTGGAGTGCCT 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 GGTTCGATTCCTGGAGTTTCATTTGGAGAAATGAAGTTGCAGATTAAGCTTGGAGTGCCT 465
Query 352 CATTCTCTTCACCAGCAGCTGGATTTGGAGAAGGTTAAGTCTATCTTCCCATAT 405
||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 466 CATTCTCTTCACCAGCAGCTGGATTTGGACAAGGTTAAGTCTATCTTCCCATAT 519
> AT1G29041.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; Has 4 Blast hits
to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 2; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:10135451-10136241 FORWARD
LENGTH=595
Length=595
Score = 651 bits (352), Expect = 0.0
Identities = 485/545 (89%), Gaps = 26/545 (5%)
Strand=Plus/Plus
Query 499 TGCAGA--AAAATGAAAGGGAATAAG---AAGATTAGTTCGATTTTCG-AGAATCGCCAT 552
|||||| |||||||||||||| ||| || ||| |||||||||||| || || || ||
Sbjct 2 TGCAGAGGAAAATGAAAGGGAAAAAGAAAAACATTGGTTCGATTTTCGAAG-ATTGCAAT 60
Query 553 GTATCTGCGTCTCAGGAGGTTTATCTACAGCGATGCGGCTTCGCCGTACCAGGTCAACCA 612
|||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||
Sbjct 61 GTATCTGCGTCTCAGGAGATTTATCTACAGCGATGCGGTTTTGCCGTACCAGGTCAACCA 120
Query 613 CCTCCAGATTCCGATCCTTCCGCCGGAGTCTCGCCACCACCGTTAAACGACGGAATTGCA 672
||||||||||||||||| |||| ||||||||| || ||||||||||||||||||||| ||
Sbjct 121 CCTCCAGATTCCGATCCCTCCGTCGGAGTCTCACCGCCACCGTTAAACGACGGAATTCCA 180
Query 673 TCTCAGCGTTCGTCCGATGATTCGG--A--G--ACGGATAGTGTAATCGGTTCGGGTCAC 726
| ||||||||| |||| |||||||| | | | ||||||||||||||| |||||| ||
Sbjct 181 TATCAGCGTTCATCCGGTGATTCGGATACGGATAAGGATAGTGTAATCGGCTCGGGTAAC 240
Query 727 TATGCGGTGGAGAGTCAGGCGATTAGATTAGTCTCTCCGGAGGAAAGCGTGGACACCGTT 786
||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||
Sbjct 241 GATGCGGTGGAGAGTCAGGCGATTCGATGCGTCACTCCGGAGGAAAGCGTGGACACCGTT 300
Query 787 GATTTAGAGGAAGATGTTGCAGATCC-AGCGGTTGAGGTTTTGGCGGAGGATAAGCAGAG 845
|||||||||||||||||||||||||| | |||||||||||| ||||||| | | ||||||
Sbjct 301 GATTTAGAGGAAGATGTTGCAGATCCGA-CGGTTGAGGTTTCGGCGGAG-A-A-GCAGAG 356
Query 846 TGATGTTCCTCTGGAATCTGCAGCGAAG--G-AAGATAGAGGAAAGAGACTTAAGATTCC 902
|||||||||||||||||||||||||||| | ||| | ||||||||| ||||||||||||
Sbjct 357 TGATGTTCCTCTGGAATCTGCAGCGAAGAAGGAAGGTGGAGGAAAGAAACTTAAGATTCC 416
Query 903 TTTGAGAGATGTTGTAAAAGCCATTGTTATGAATTCGAAGAA-CACAGAGGAAGAAGAAG 961
||| || || ||||| |||||||| ||||||||||||| ||| |||||||||||||||||
Sbjct 417 TTTAAGGGAAGTTGTGAAAGCCATAGTTATGAATTCGA-GAAACACAGAGGAAGAAGAAG 475
Query 962 CTGACAAAGAGATTAAGAAGATGAGCTGTGTGCAAATCCTCTTGCAAAAGGGATTCAAAT 1021
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 ---ACAAAGAGATTGAGAAGATGAGCTGTGTGCAAATCCTCTTGCAAAAGGGATTCAAAT 532
Query 1022 TTTAA 1026
|||||
Sbjct 533 TTTAA 537
> AT1G34044.1 | Symbols: | unknown pseudogene | chr1:12386219-12387342
FORWARD LENGTH=597
Length=597
Score = 285 bits (154), Expect = 6e-76
Identities = 231/267 (87%), Gaps = 10/267 (4%)
Strand=Plus/Plus
Query 1 ATGTCTCTTTCGTTGATTTCTGGTTCGATTCTTATCTGC-CC-CG-ATC-T-TC-GTCAA 54
|||||| |||| |||| ||||||||||||| |||||||| || | ||| | || |||||
Sbjct 1 ATGTCTATTTCCTTGACTTCTGGTTCGATTGTTATCTGCTCCGAGCATCGTATCTGTCAA 60
Query 55 TCTCCGTCGTATTTGAGAATCTCTTCTTCGCCGCCACTTTCTCTCTCTTCCCGTAGTAAG 114
||||||| ||||||||||| ||||||||||| ||||||||| |||| |||| ||| ||||
Sbjct 61 TCTCCGTTGTATTTGAGAACCTCTTCTTCGCAGCCACTTTCCCTCTTTTCCTGTAATAAG 120
Query 115 TCTTCT-TCTCCCCACCAGTTTTCTCAAATCTCACGCCCGATCAAAGTCACCGCGAGAAG 173
| || |||| |||||||||| |||| |||||||| ||||||||||||| || ||||
Sbjct 121 -CAACTCTCTCTCCACCAGTTTACTCATATCTCACGTACGATCAAAGTCACTGCAAGAAA 179
Query 174 CGCCATGGA-GACGACGGCGGAGACCATTTCCGGCGGTGTTCCCAACAATACAATGAAGC 232
|||||| || ||||||||||||||| |||||| ||||||||||||||||||| |||||||
Sbjct 180 CGCCAT-GATGACGACGGCGGAGACAATTTCCAGCGGTGTTCCCAACAATACGATGAAGC 238
Query 233 TATTGTTCGTTGAGATGGGTGTCGGTT 259
|||||||||||||||||||||| ||||
Sbjct 239 TATTGTTCGTTGAGATGGGTGTGGGTT 265
Score = 159 bits (86), Expect = 4e-38
Identities = 101/108 (94%), Gaps = 1/108 (1%)
Strand=Plus/Plus
Query 291 AGGTTCGATTCCTGGAGTTTCATTTGGAGAAATGAAGTTGCAGATTAAGCTTGGAGTGCC 350
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 354 AGGTTCGATTCCTTGAGTTTCATTTGGAGTAATGAAGTTGCAGATTAAGCTTGGAGTGCC 413
Query 351 TCATTCTCTTCACCAGCAGCTGGATTTGGAGAAGGTTAAGTCTATCTT 398
|||||||||||| || |||||||||||||||||||| ||| ||||||
Sbjct 414 TCATTCTCTTCATCAACAGCTGGATTTGGAGAAGGT-AAGAATATCTT 460
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50284381147
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5