BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313612
Length=597
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29590.2 | Symbols: eIF4E3 | Eukaryotic initiation factor 4E... 861 0.0
AT1G29550.1 | Symbols: | Eukaryotic initiation factor 4E prote... 854 0.0
> AT1G29590.2 | Symbols: eIF4E3 | Eukaryotic initiation factor
4E protein | chr1:10339937-10342848 FORWARD LENGTH=1136
Length=1136
Score = 861 bits (466), Expect = 0.0
Identities = 540/575 (94%), Gaps = 7/575 (1%)
Strand=Plus/Plus
Query 23 ACTACGCGTTGAAGAAATCAACCACCGTAATCCAGAAATCGCACT-TCTTCCAGAGTTCT 81
||||||||| |||||||||||| |||||||||||||||||||||| | ||||||| ||||
Sbjct 287 ACTACGCGTCGAAGAAATCAACTACCGTAATCCAGAAATCGCACTGT-TTCCAGAATTCT 345
Query 82 TGGACCTTTTGGTTCGATAATCCTTCCTCGAAATCGAATCAAGTCACATGGGGAAGTTCT 141
||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||| |||
Sbjct 346 TGGACATTTTGGTTCGATAATCCTTCCTCCAAATCGAATCAAGTCATATGGGGAAGCTCT 405
Query 142 TTGAGATCTTTGTATACATTCGCTACTATCGAAGAGTTCTGGAGTCTTTACAATAACATT 201
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 406 TTGAGATCTTTGTATACATTCGCTACCATCGAAGAGTTCTGGAGTCTTTACAATAACATT 465
Query 202 CATCCTCCAACCAAGTGGGT-TCCAGGGGCGGATCTCTACTGCTTCAAACATAAGATTGA 260
|||||||||||||||||||| | ||||| |||||||||||||||||||| ||||||||||
Sbjct 466 CATCCTCCAACCAAGTGGGTGT-CAGGGTCGGATCTCTACTGCTTCAAAGATAAGATTGA 524
Query 261 ACCAAAATGGGAAGATCCTATCTGTGCTAATGGAGGAAAGTGGACTATGTTTTTCCCTAA 320
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 525 ACCAAAATGGGAAGATCCTATCTGTGCCAATGGAGGAAAATGGACTATGTTTTTCCCT-- 582
Query 321 AGCAGCTACACTAGAATCCAATTGGCTTAACACGCTACTTGCGTTGGTTGGTGAACAATT 380
|| ||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||
Sbjct 583 AG-AGCTACACTAGAATCTAATTGGCTTAACACGTTACTTGCGTTGGTTGGTGAGCAATT 641
Query 381 TGACCAAGGAGATGAGATTTGTGGGGCAGTTTTGAACTTCAGAACGAGAGGGGATAGGAT 440
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 642 TGACCAAGGAGATGAGATCTGTGGAGCAGTTTTGAACTTCAGAACGAGAGGGGACAGGAT 701
Query 441 CTCTCTATGGACAAAGAACGCTGCAAATGAGGAGGCTCAGCTAAGCATTGGGAAGCAGTG 500
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 702 CTCTCTATGGACAAAGAAAGCTGCAAATGAGGAGGCTCAGCTAAGCATTGGGAAGCAGTG 761
Query 501 GAAGGAACTTCTTGGTTACAATGAGAAAATTGGATTCATAGTTCATGAGGATGCAAAGAC 560
||||||||||||||| |||||||| | ||| ||||| |||||||||||||||||||||||
Sbjct 762 GAAGGAACTTCTTGGCTACAATGACACAATCGGATTTATAGTTCATGAGGATGCAAAGAC 821
Query 561 TCTTGATCGTCATGCTAAAAGTCGGTATACTGTAT 595
|||||||||| |||||||| |||| |||||| |||
Sbjct 822 TCTTGATCGTGATGCTAAACGTCGATATACTATAT 856
> AT1G29550.1 | Symbols: | Eukaryotic initiation factor 4E protein
| chr1:10330514-10332326 FORWARD LENGTH=955
Length=955
Score = 854 bits (462), Expect = 0.0
Identities = 539/576 (94%), Gaps = 5/576 (1%)
Strand=Plus/Plus
Query 23 ACTACGCGTTGAAGAAATCAACCACCGTAATCCAGAAATCGCACT-TCTTCCAGAGTTCT 81
||||||||| |||||||||||| |||||||||||||||||||||| | ||||||| ||||
Sbjct 152 ACTACGCGTCGAAGAAATCAACTACCGTAATCCAGAAATCGCACTGT-TTCCAGAATTCT 210
Query 82 TGGACCTTTTGGTTCGATAATCCTTCCTCGAAATCGAATCAAGTCACATGGGGAAGTTCT 141
||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||| |||
Sbjct 211 TGGACATTTTGGTTCGATAATCCTTCCTCCAAATCGAATCAAGTCATATGGGGAAGCTCT 270
Query 142 TTGAGATCTTTGTATACATTCGCTACTATCGAAGAGTTCTGGAGTCTTTACAATAACATT 201
|||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 271 TTGAGATCCTTGTATACATTCGGTACTATCGAAGAGTTCTGGAGTCTCTACAATAACATT 330
Query 202 CATCCTCCAACCAAGTGGGTTCCAGGGGCGGATCTCTACTGCTTCAAACATAAGATTGAA 261
||||||||||||||||||||| | ||||||||||| |||||||||||| |||||||||||
Sbjct 331 CATCCTCCAACCAAGTGGGTTTCGGGGGCGGATCTTTACTGCTTCAAAGATAAGATTGAA 390
Query 262 CCAAAATGGGAAGATCCTATCTGTGCTAATGGAGGAAAGTGGACTATGTTTTTCCCTAAA 321
|||||||||||||||||||||||||||||||||||||| |||| |||| | |||||| ||
Sbjct 391 CCAAAATGGGAAGATCCTATCTGTGCTAATGGAGGAAAATGGAGTATGATGTTCCCT-AA 449
Query 322 GCAGCTACACTAGAATCCAATTGGCTTAACACGCTACTTGCGTTGGTTGGTGAACAATTT 381
|||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 450 --AGCTACACTAGAATGCAATTGGCTTAACACGTTACTTGCGTTGGTTGGTGAGCAATTT 507
Query 382 GACCAAGGAGATGAGATTTGTGGGGCAGTTTTGAACTTCAGAACGAGAGGGGATAGGATC 441
||||||||||||||||| ||||| |||||||||||||||||| |||||||||| ||||||
Sbjct 508 GACCAAGGAGATGAGATCTGTGGAGCAGTTTTGAACTTCAGAGCGAGAGGGGACAGGATC 567
Query 442 TCTCTATGGACAAAGAACGCTGCAAATGAGGAGGCTCAGCTAAGCATTGGGAAGCAGTGG 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 TCTCTATGGACAAAGAACGCTGCAAATGAGGAGGCTCAGCTAAGCATTGGGAAGCAGTGG 627
Query 502 AAGGAACTTCTTGGTTACAATGAGAAAATTGGATTCATAGTTCATGAGGATGCAAAGACT 561
|||||||||||||| |||||||||| ||| ||||| ||||||||||||||||||||||||
Sbjct 628 AAGGAACTTCTTGGCTACAATGAGACAATCGGATTTATAGTTCATGAGGATGCAAAGACT 687
Query 562 CTTGATCGTCATGCTAAAAGTCGGTATACTGTATGA 597
||||||||| |||||||| |||| ||||||||||||
Sbjct 688 CTTGATCGTGATGCTAAACGTCGATATACTGTATGA 723
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28733932084
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5