BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313613
Length=888
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29600.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fam... 793 0.0
> AT1G29600.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family
protein | chr1:10344046-10346243 FORWARD LENGTH=1170
Length=1170
Score = 793 bits (429), Expect = 0.0
Identities = 698/819 (85%), Gaps = 54/819 (7%)
Strand=Plus/Plus
Query 1 ATGGCTAACGTTTCTTTTACTCTTGATTCTCAGGGACAAACTCAGGAATTGAGGCCGAGT 60
|||||||||||||| |||||| |||||||||||| ||||| | |||||||||||||||||
Sbjct 1 ATGGCTAACGTTTCGTTTACTTTTGATTCTCAGGAACAAAATAAGGAATTGAGGCCGAGT 60
Query 61 GGATTAGGGGGTAGATCTGATGAGAGAACTGGTAGGAGACATGGAAAAGAGCCAGAGAAG 120
|||||| |||||||||||||||||||| |||||||||||| |||| ||||| | |||||
Sbjct 61 AGATTAGTGGGTAGATCTGATGAGAGAAATGGTAGGAGACAGGGAACAGAGCAAAAGAAG 120
Query 121 ATGGAGAAAGAAGACTTGAGTTTTGGAATAAGCGAGGAGGGTGAGATTCCTGAT-CAACA 179
| |||||||||||||| | ||||| || ||||||| ||||||||||||||| | |||||
Sbjct 121 AAGGAGAAAGAAGACTCGGGTTTTAGAGTAAGCGAAGAGGGTGAGATTCCT-TTGCAACA 179
Query 180 AGAGTCAGATGCAGACTCAGACGCGCGATATTATCTGAGACAACAACAGAGAGTGAGTAA 239
|| |||| || | |||||| ||||||| || |||||| ||||||||||||||||||| |
Sbjct 180 AGGGTCAAATACTGACTCATACGCGCGGGATGATCTGACACAACAACAGAGAGTGAGTGA 239
Query 240 TGTTGAGATGCAGAGGAGAAGCCATGAAACAGAGTCGAGATTATGGCAAAGGGCTAGAAC 299
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGTTGTGATGCAGAGGAGAAGCCATGAAACAGAGTCGAGATTATGGCAAAGGGCTAGAAC 299
Query 300 TCCTGATTCGAGAGGAAGTGGATCCACAATGATGTTGGA-GGAGAGAACTCAGGGGAGAT 358
|| ||| ||||||||||| ||||| ||||||||| || || |||||||||| |||| |
Sbjct 300 TCAGGATAGGAGAGGAAGTGAATCCAGAATGATGTTTGATGG-GAGAACTCAGTGGAG-T 357
Query 359 C-CGAACCGGTGCTA---AGTGCGTATCCAATTCGCCCCGGTGAAGAAAATTGTCCGTTT 414
| || |||||||||| |||||||||||| |||||||||||||||| ||||||| ||||
Sbjct 358 CACGCACCGGTGCTATCGAGTGCGTATCCAGTTCGCCCCGGTGAAGATAATTGTCTGTTT 417
Query 415 TATCTAAAAAATCATCTGTGTGGCTGGGGAAGCGATTGTTGTTACAATCATCCTCCTCTA 474
||| | ||||| |||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 418 TATATGAAAAACCATCTGTGTGAATGGGGAAGCGAGTGTTGTTACAATCATCCTCCTCTA 477
Query 475 CATGAGATTCCGTACAGGATTGGTAATAAGCTGGATTGCAAGTTTTTTAAGGCAGGATCT 534
|| |||||||||| |||||||||||| ||||||||||||||| | ||||| ||
Sbjct 478 CAAGAGATTCCGTGCAGGATTGGTAAGAAGCTGGATTGCAAG--------G-CAGGAGCT 528
Query 535 TGTAAGAGAGGCTCAAATTGTCAATTTTATCACCCAA-GG---G--ATGGTGC-AGA--A 585
|||||||||||||||||||||| |||| ||||||||| || | |||||| || |
Sbjct 529 TGTAAGAGAGGCTCAAATTGTCCATTTAATCACCCAAAGGAAAGGGATGGTGATAGTTTA 588
Query 586 CCTATGCGTCAGGGTAGAACTCCGGATTTGAGAAGGAATGATTCAGGGAGGAGGAGGTAC 645
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 589 CCTATGCCTCAGGGTAGAACTCCGGATTTGAGAAGGAATGATTCAGGGAGGAGG---TAC 645
Query 646 AAAACAGAGGCAAGATCCTGGCCAGAGAAGAGGGAGAAAGAAGACTCTGGATTTAGAAGA 705
|| |||||| ||||||| ||||||||||| | ||||||||||| | || |
Sbjct 646 AATACAGAGTCAAGATCATGGCCAGAGAATAAGGAGAAAGAAG--T--GG-----GC--- 693
Query 706 AACGAAGTGGGTCAGTTTCGTGATCACCAAGACTCTGACGAAGACTCGCAAGAGATTCTG 765
| | || | | |||||||||||||||||| | |||||| |||||||| |||||
Sbjct 694 --C-A-GT---T---T--CGTGATCACCAAGACTCTAAAGAAGACGCGCAAGAGGTTCTG 741
Query 766 CTACAACAGAGACCTAGAGATGTTGAGATGCGGAAGAGG 804
|||||||||||||||||||||||||||||||||||||||
Sbjct 742 CTACAACAGAGACCTAGAGATGTTGAGATGCGGAAGAGG 780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43352068861
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5