BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313633
Length=846
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29860.1 | Symbols: WRKY71, ATWRKY71 | WRKY DNA-binding prot... 1103 0.0
AT4G18170.1 | Symbols: WRKY28, ATWRKY28 | WRKY DNA-binding prot... 224 1e-57
> AT1G29860.1 | Symbols: WRKY71, ATWRKY71 | WRKY DNA-binding protein
71 | chr1:10454482-10455785 FORWARD LENGTH=982
Length=982
Score = 1103 bits (597), Expect = 0.0
Identities = 784/866 (91%), Gaps = 46/866 (5%)
Strand=Plus/Plus
Query 7 GATCATCATGTTGAGCA-GA--AGAACACA-CATTTAGAAGAAGTATCA-TTCACA-AGC 60
||| ||||||||||||| | | |||||| | ||||||||||||| || |||| | |||
Sbjct 4 GATGATCATGTTGAGCACAATTATAACACATC-TTTAGAAGAAGTA-CACTTCA-AGAGC 60
Query 61 TTAAGTGATTGCTTACAAAGCTCATTAGTAATGGATTAT-A---A-T---GAA----TTC 108
||||||||||||||||||||||||||||||||||||||| | | | ||| |||
Sbjct 61 TTAAGTGATTGCTTACAAAGCTCATTAGTAATGGATTATAACTCACTAGAGAAGGTCTTC 120
Query 109 -----C-CACCTTATAGTTCCCCTTTTCAACCGGTTTCACCGTCCGATATGGGCCATATA 162
| ||||||||||||||||||||||| |||||||| ||| | | |
Sbjct 121 AAATTCTCACCTTATAGTTCCCCTTTTCAATCGGTTTCA----CCG---T----C----A 165
Query 163 GTAAACAATCCTTACTTAAATCTCAATTCGAATTCTCCAGTGGTCTCATCTTCCTCCAAT 222
|||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 166 GTAAACAACCCTTACTTAAATCTCACTTCGAATTCTCCGGTGGTCTCATCTTCCTCCAAT 225
Query 223 GAAGCCGAGCTTAAAGAGAAC-CCTGACGATAAGAGTGACCGAATGGAGGATAACGAAGA 281
|||| ||||| |||||||||| || ||||||||||||||| |||||||||||||||||
Sbjct 226 GAAGGCGAGCCTAAAGAGAACACC-AACGATAAGAGTGACCAAATGGAGGATAACGAAGG 284
Query 282 CAACCAACATGGTGTTGGTAAAAGCTCCAAGCAATC-GACAAAACAAGGTaaaaagaaag 340
| ||| ||||||||||||| |||||||||||||| | |||||||||||||||||||||||
Sbjct 285 CGACCTACATGGTGTTGGTGAAAGCTCCAAGCAA-CTGACAAAACAAGGTAAAAAGAAAG 343
Query 341 gagagaagaaagagagagaagCTAGGGTTGCATTTATGACCAAAAGCGAGATTGATCATC 400
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 344 GAGAGAAGAAAGAGAGAGAAGTTAGGGTTGCATTTATGACCAAAAGCGAGATTGATCATC 403
Query 401 TTGAAGATGGTTATAGATGGAGAAAATATGGACAAAAGGCCGTCAAGAACAGTCCTTATC 460
|||||||||||||||||||| |||||||||||||||| || || |||||||| |||||||
Sbjct 404 TTGAAGATGGTTATAGATGGCGAAAATATGGACAAAAAGCAGTGAAGAACAGCCCTTATC 463
Query 461 CAAGGAGTTACTATAGGTGCACAACACAGAAGTGTAACGTGAAGAAACGTGTAGAGAGAT 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 CAAGGAGTTACTATAGGTGCACAACACAGAAGTGTAACGTGAAGAAACGTGTAGAGAGAT 523
Query 521 CATTTCAAGATCCGTCGATCGTAATTACAACCTACGAAGGAAAACACAACCATCCGATCC 580
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 CGTTTCAAGATCCGTCGATCGTAATTACAACCTACGAAGGAAAACACAACCATCCGATCC 583
Query 581 CGTCGACGTTGAGAGGAACCGTGGCCGCTGAACATCTACTAGGCCACCGTGGTGGTGGAG 640
| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 584 CATCGACGTTGAGAGGAACCGTGGCAGCTGAACATCTACTAGTCCACCGTGGTGGTGGAG 643
Query 641 GCGGTTTCCTCCATAGCTTCCCTCGTCACCATCAAGAGTTTCTCATGATGAAACATCCTC 700
|| |||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 644 GCAGTTTACTCCATAGCTTCCCTCGTCACCATCAAGATTTTCTCATGATGAAACATTCTC 703
Query 701 TGGCCAATTATCAATCGGTGGGATCTATGTCGTACGAACATGGTCATGGGACCTCTAGTT 760
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 704 CGGCCAATTATCAATCGGTGGGATCTCTGTCGTACGAACATGGCCATGGGACCTCTAGTT 763
Query 761 ACAATTTTAATAATAATCAACCAGTTGTTGACTATGGCCTTCTTCAGGACATTCTTCCTT 820
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 764 ACAATTTTAATAATAATCAACCAGTTGTTGACTATGGTCTTCTTCAGGACATTGTTCCTT 823
Query 821 CAATGTTCTCCAAGCACGAATCTTGA 846
|||||||||||||| |||| ||||||
Sbjct 824 CAATGTTCTCCAAGAACGAGTCTTGA 849
> AT4G18170.1 | Symbols: WRKY28, ATWRKY28 | WRKY DNA-binding protein
28 | chr4:10061373-10062841 FORWARD LENGTH=1242
Length=1242
Score = 224 bits (121), Expect = 1e-57
Identities = 202/241 (84%), Gaps = 6/241 (2%)
Strand=Plus/Plus
Query 345 gaagaaagagagagaagCTA-GGGT-TGCATTTATGACCAAAAGCG-AGATTGATCATCT 401
||||||| | |||| ||| | | || | | |||||||| ||||| | || ||||||||||
Sbjct 591 GAAGAAACAAAGAG-AGCCACGAGTCT-CGTTTATGACTAAAAGTGAAG-TTGATCATCT 647
Query 402 TGAAGATGGTTATAGATGGAGAAAATATGGACAAAAGGCCGTCAAGAACAGTCCTTATCC 461
||||||||||||||||||||||||||| || |||||||| || || || || ||||||||
Sbjct 648 TGAAGATGGTTATAGATGGAGAAAATACGGCCAAAAGGCTGTAAAAAATAGCCCTTATCC 707
Query 462 AAGGAGTTACTATAGGTGCACAACACAGAAGTGTAACGTGAAGAAACGTGTAGAGAGATC 521
||||||||||||||| || |||||||| ||||| |||||||||||||| || ||||||||
Sbjct 708 AAGGAGTTACTATAGATGTACAACACAAAAGTGCAACGTGAAGAAACGAGTGGAGAGATC 767
Query 522 ATTTCAAGATCCGTCGATCGTAATTACAACCTACGAAGGAAAACACAACCATCCGATCCC 581
|| |||||||| || | || |||||||| ||||| || |||||||||| ||||| ||
Sbjct 768 GTTCCAAGATCCAACGGTTGTGATTACAACTTACGAGGGTCAACACAACCACCCGATTCC 827
Query 582 G 582
|
Sbjct 828 G 828
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41242234687
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5