BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313641
Length=510
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29960.1 | Symbols: | Peptidase S24/S26A/S26B/S26C family p... 782 0.0
AT1G23465.1 | Symbols: | Peptidase S24/S26A/S26B/S26C family p... 704 0.0
> AT1G29960.1 | Symbols: | Peptidase S24/S26A/S26B/S26C family
protein | chr1:10494707-10496170 FORWARD LENGTH=935
Length=935
Score = 782 bits (423), Expect = 0.0
Identities = 483/512 (94%), Gaps = 4/512 (1%)
Strand=Plus/Plus
Query 1 ATGGTGTCTCTGTCGTCATCTTTCTGGACCACAGCTTCACGAGAAGCCATGAAAAGCGGC 60
|||| | ||| |||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 107 ATGGCGACTCCGTCGTCGTCTTTCTGGAACACAGCTTCACGAGAAGCCATGAAAAGCGGC 166
Query 61 GTGTTTA-TTGCGAAACTCTACTGCTTCCTCCATGTAACAACAAACTATCTCGGATTCAT 119
||| ||| | ||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 167 GTG-TTACTCGCGAAACTCTACTGCTTTCTTCATGTAACAACAAACTATCTCGGATTCAT 225
Query 120 GGCTTATGCTTATGGTCCGAGCATGACTCCGACGCTTCATCCTTCGGGGAATGTGTTATT 179
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 226 GGCTTATGCTTATGGTCCGAGCATGACTCCGACGCTTCATCCTTCGGGAAATGTGTTATT 285
Query 180 AGCTGAGAGAATTTCTAAGCGGTATCGGAAACCAAGTCGTGGAGATATAGTTGTGATACG 239
||| |||||||| || |||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 286 AGCGGAGAGAATCTCGAAGCGGTATCAGAAACCGAGTCGTGGAGATATAGTTGTGATACG 345
Query 240 ATCTCCAGAAAACCCTAATAAGACTCCGATTAAGAGAGTTGTTGGTATTGAAGGTGATTG 299
||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||
Sbjct 346 ATCTCCAGAAAACCCTAATAAGACTCCAATTAAAAGAGTTATTGGTATTGAAGGTGATTG 405
Query 300 TATAAGCTTTGTGGTTGA-TCCAGTGAAGAGTGATAAATCTCAAACCATTGTGGTTCCTA 358
||||||||||||| |||| || || |||||||||| ||||||||||||||||||||||||
Sbjct 406 TATAAGCTTTGTGATTGATTCAAG-GAAGAGTGATGAATCTCAAACCATTGTGGTTCCTA 464
Query 359 AAGGACATGTCTTCGTTCAAGGTGACTATACTCATAACTCAAGAGACTCAAGAACCTTTG 418
||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 465 AAGGACATGTCTTTGTTCAAGGTGACTATACTCATAACTCACGAGACTCAAGAAACTTTG 524
Query 419 GTCCTGTACCTTATGGTCTTATTCAAGGCAGAGTGCTTTGGAGGGTTTGGCCATTTCAAG 478
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 GTACTGTACCTTACGGTCTTATTCAAGGCAGAGTGCTTTGGAGGGTTTGGCCATTTCAAG 584
Query 479 ATTTTGGACCGCTTGGACCAACCCCAACTTAG 510
||||||||||||||||||||||||||||||||
Sbjct 585 ATTTTGGACCGCTTGGACCAACCCCAACTTAG 616
> AT1G23465.1 | Symbols: | Peptidase S24/S26A/S26B/S26C family
protein | chr1:8330055-8330938 FORWARD LENGTH=468
Length=468
Score = 704 bits (381), Expect = 0.0
Identities = 429/453 (95%), Gaps = 0/453 (0%)
Strand=Plus/Plus
Query 12 GTCGTCATCTTTCTGGACCACAGCTTCACGAGAAGCCATGAAAAGCGGCGTGTTTATTGC 71
||| || |||||||||| ||||||||||||||||||||||||||||||| ||||| | ||
Sbjct 12 GTCATCGTCTTTCTGGAACACAGCTTCACGAGAAGCCATGAAAAGCGGCATGTTTGTCGC 71
Query 72 GAAACTCTACTGCTTCCTCCATGTAACAACAAACTATCTCGGATTCATGGCTTATGCTTA 131
|||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 72 GAAAGTCTACTGCTTTCTTCATGTAACAACAAACTATCTCGGATTCATGGCTTATGCTTA 131
Query 132 TGGTCCGAGCATGACTCCGACGCTTCATCCTTCGGGGAATGTGTTATTAGCTGAGAGAAT 191
|||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 132 TGGTCCGAGCATGATTCCGACGCTTCATCCTTCGGGAAATATGTTATTAGCTGAGAGAAT 191
Query 192 TTCTAAGCGGTATCGGAAACCAAGTCGTGGAGATATAGTTGTGATACGATCTCCAGAAAA 251
|| |||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 192 CTCGAAGCGGTATCAGAAACCGAGTCGTGGAGATATAGTTGTGATACGATCTCCAGAGAA 251
Query 252 CCCTAATAAGACTCCGATTAAGAGAGTTGTTGGTATTGAAGGTGATTGTATAAGCTTTGT 311
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 252 CCCTAATAAGACTCCGATTAAGAGAGTTGTTGGTGTTGAAGGTGATTGTATAAGCTTTGT 311
Query 312 GGTTGATCCAGTGAAGAGTGATAAATCTCAAACCATTGTGGTTCCTAAAGGACATGTCTT 371
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 312 GATTGATCCAGTGAAGAGTGATGAATCTCAAACCATTGTGGTTCCTAAAGGACATGTCTT 371
Query 372 CGTTCAAGGTGACTATACTCATAACTCAAGAGACTCAAGAACCTTTGGTCCTGTACCTTA 431
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 372 TGTTCAAGGTGACTATACTCATAACTCGAGAGACTCAAGAAACTTTGGTCCTGTACCTTA 431
Query 432 TGGTCTTATTCAAGGCAGAGTGCTTTGGAGGGT 464
|||||||||||||||||||||||| ||||||||
Sbjct 432 TGGTCTTATTCAAGGCAGAGTGCTATGGAGGGT 464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24363561295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5