BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313692
Length=1746
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30520.1 | Symbols: AAE14 | acyl-activating enzyme 14 | chr1... 1591 0.0
> AT1G30520.1 | Symbols: AAE14 | acyl-activating enzyme 14 | chr1:10810984-10813700
FORWARD LENGTH=1892
Length=1892
Score = 1591 bits (861), Expect = 0.0
Identities = 981/1041 (94%), Gaps = 0/1041 (0%)
Strand=Plus/Plus
Query 706 GTGTATTTGCATACATCACCATTAGTTCATATCGGCGGTCTGTCATCAGCTATGGCCATG 765
||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 GTGTATTTGCACACGTCTCCATTAGTTCATATCGGCGGTCTGTCATCAGCTATGGCCATG 757
Query 766 CTAATGGTTGGTGCTTGCCATGTTCTGCTGCCCAAGTTTGATGCTAAAACAGCCCTTCAA 825
||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 758 CTAATGGTTGGAGCTTGCCATGTTCTGCTGCCCAAGTTTGATGCCAAAACAGCTCTTCAA 817
Query 826 GTTATGGAACAAAACCGTATAACTTGCTTCATCACCGTCCCAGCTATGATGGCTGATCTT 885
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 GTTATGGAACAAAACCATATAACTTGCTTCATCACCGTCCCAGCTATGATGGCTGATCTT 877
Query 886 ATTCGTGTCAACAGGACAAAGAATAATGGAGCTGAAAACCGCGGTGTGAGAAAGATACTA 945
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 878 ATTCGTGTCAACAGGACAACGAAAAATGGAGCTGAAAACCGCGGTGTGAGAAAGATACTA 937
Query 946 AATGGAGGTGGATCTTTATCAACCCAACTTCTTCAAGAAGCTGTAAAAATCTTCCCATGT 1005
|| ||||||||||||||||||| | |||| ||| |||||||||| || ||||||||||||
Sbjct 938 AACGGAGGTGGATCTTTATCAAGCGAACTCCTTAAAGAAGCTGTGAACATCTTCCCATGT 997
Query 1006 GCGAAAATACTTTCAGCATATGGGATGACAGAGGCATGCTCTTCGCTGACCTTCATGACT 1065
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 998 GCGAGGATACTTTCAGCATATGGGATGACAGAGGCGTGCTCTTCGCTGACCTTCATGACT 1057
Query 1066 CTCCATGATCCAACACAAGAGTCTTTTAAGGTGACATATCCTTTGGTTAATCAACCGAAG 1125
||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||| |||
Sbjct 1058 CTCCATGATCCAACACAAGAGTCTTTTAAGGTGACTTATCCTTTGCTTAACCAACCAAAG 1117
Query 1126 CAAGGCACATGTGTTGGCAAGCCTGCGCCTCATATCGAACTGATGATTAAACTCGACGAA 1185
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1118 CAAGGCACATGTGTTGGCAAGCCTGCCCCTCATATCGAACTGATGGTTAAACTCGACGAA 1177
Query 1186 AATTCATCGAGGGTCGGGAAAATTCTAACTCGCGGACCACACACAATGCTTGGATATTGG 1245
|||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||
Sbjct 1178 GATTCATCGAGGGTCGGGAAAATTCTAACGCGCGGACCACACACTATGCTTAGATATTGG 1237
Query 1246 GGTCATAAACTTGTTCAAGAAAGTGTTGCATCATCAGAATCCAGAAGCAATGAAGCTTGG 1305
|||||| || | | |||||||| ||||| | |||||||||||||||||||||||||||||
Sbjct 1238 GGTCATCAAGTAGCTCAAGAAAATGTTGAAACATCAGAATCCAGAAGCAATGAAGCTTGG 1297
Query 1306 CTTGACACAGGTGATATTGGAACCTTTGATGAGTTTGGGAACTTATGCCTTATAGGTCGG 1365
||||||||||||||||| || |||||||||||||||| |||||||| |||||||| |||
Sbjct 1298 CTTGACACAGGTGATATCGGGGCCTTTGATGAGTTTGGTAACTTATGGCTTATAGGCCGG 1357
Query 1366 TCCAATGGCCGAATCAAAACTGGAGGCGAGAATGTTTACCCCGAAGAGGTCGAAGCTGTT 1425
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1358 TCCAATGGCCGAATCAAGACTGGAGGCGAGAATGTTTACCCCGAAGAGGTGGAAGCTGTT 1417
Query 1426 CTAGTAGAGCATCCTGGGATTGTTTCTGCCGTGGTTATAGGCGTCATTGATGTTCGTCTT 1485
|||||||||||||| |||||||||||||| ||||| ||||||||||||||| |||||||
Sbjct 1418 CTAGTAGAGCATCCAGGGATTGTTTCTGCTGTGGTGATAGGCGTCATTGATACTCGTCTT 1477
Query 1486 GGAGAGATGGTCGTTGCTTGTGTTCGTTTAGAGGAGAATTGGATATGGTCTGATATTGAA 1545
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||
Sbjct 1478 GGAGAGATGGTCGTTGCTTGTGTTCGTTTACAGGAGAAATGGATATGGTCTGATGTTGAA 1537
Query 1546 AACCGCAAACGAAGTTTCCAACTGTCAAGTGAGACACTCAAACATCATTGTAGAACACAG 1605
||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1538 AACCGTAAAGGAAGTTTCCAACTGTCAAGTGAGACACTCAAACATCATTGCAGAACACAG 1597
Query 1606 AACCTAACCGGGTTTAAGATGCCGAAGAGGTTTGTCCAATGGGAGAAGCAGTTTCCGTTG 1665
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 1598 AACCTAACCGGGTTTAAGATACCGAAGAGGTTTGTCCGATGGGAGAAGCAGTTTCCGTTG 1657
Query 1666 ACAACAACTGGGAAAGTGAAAAGAGATGAAGTTCGAAGACAAGTTATGTCTCATTTCCAA 1725
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1658 ACAACAACTGGGAAAGTGAAAAGAGATGAAGTTCGAAGACAAGTTTTGTCTCATTTCCAA 1717
Query 1726 ATCTTGACTAGCTCTCTATGA 1746
||| ||||||||||||| |||
Sbjct 1718 ATCATGACTAGCTCTCTCTGA 1738
Score = 929 bits (503), Expect = 0.0
Identities = 598/645 (93%), Gaps = 2/645 (0%)
Strand=Plus/Plus
Query 1 ATGGCTAATCACTCTCGGCCTCACATCTGTCAGTGTTTGACTCAGCTAGCCTCCGTCAAA 60
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 56 ATGGCTAATCACTCTCGGCCTCACATCTGCCAGTGTTTGACTCGGCTAGCCTCCGTCAAA 115
Query 61 CGGAACGCCGTCGTTACAGTGTACGGAAACCGGATA-CGCACCGGCAGGGAGTTCGTAGA 119
|||||||||||||| ||||| ||||||||||||| | |||||||||||||||||||| ||
Sbjct 116 CGGAACGCCGTCGTCACAGTCTACGGAAACCGGA-AGCGCACCGGCAGGGAGTTCGTTGA 174
Query 120 CGGCGTACTGAGCCTCGCCGCCGGACTGATTCGTCTCGGCCTCCGCAACGGAGATGTCGT 179
||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 175 CGGCGTACTGAGCCTTGCCGCCGGACTGATTCGTCTCGGCCTCCGAAACGGTGATGTCGT 234
Query 180 TTCTGTTGCTGCTCTTAACAGTGATTTGTTCTTGGAGTGGTTATTGGCTGTTGCATTGGT 239
||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 235 CTCTATTGCTGCTTTTAACAGTGATTTGTTCTTGGAGTGGTTATTAGCTGTTGCATTGGT 294
Query 240 TGGAGGAATAGTTGCTCCTTTGAATTACAGATGGAGCTTGAAAGAAGCAAAGATGGCAAT 299
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 295 TGGAGGAGTAGTTGCTCCTTTGAATTACAGATGGAGCTTGAAAGAAGCAAAAATGGCAAT 354
Query 300 GCTGCTAGTAGAACCTGTGCTTTTGGTTACTGATGAAACATGTGTCTCTTGGTGCGTTCA 359
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||| || |
Sbjct 355 GCTGCTAGTAGAACCTGTGCTTTTGGTTACTGATGAGACATGTGTCTCGTGGTGCATTGA 414
Query 360 TGTTCAGAATGGAGATATACCTTCGTTGAAATGGCGTGTGTTGATGGAGTCTACCTCTAC 419
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 415 TGTTCAAAATGGAGATATACCTTCCTTGAAATGGCGTGTGTTGATGGAGTCTACTTCAAC 474
Query 420 AGAATTAGCGAATGATGATAATCAGTTTTTGACAACCGAGATGATTAAACAGCGTACGTT 479
||| || || ||||| ||| ||||||||||||||||||||| ||||||||||||| |
Sbjct 475 AGATTTTGCAAATGAACTTAACCAGTTTTTGACAACCGAGATGCTTAAACAGCGTACACT 534
Query 480 GGTGCCTTCCTTACCAATGTACGCTTGGGCTCCTGATGATGCCGTTGTGATATGCTTCAC 539
||||||||||||| ||| ||| ||||||||| |||||||||| ||||| ||||| |||||
Sbjct 535 GGTGCCTTCCTTAGCAACGTATGCTTGGGCTTCTGATGATGCTGTTGTTATATGTTTCAC 594
Query 540 TTCTGGTACAACGGGAAGACCCAAGGGTGTCACCATAAGCCACTTGGCTTTCATCACACA 599
|||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 595 TTCTGGTACAACGGGAAGACCCAAGGGTGTGACGATAAGCCACTTGGCTTTCATAACACA 654
Query 600 GTCTCTAGCTAAGATTGCTATTGTTGGATATGGTGAGGATGATGT 644
||||||||||||||||||||||| ||| || ||||||||||||||
Sbjct 655 GTCTCTAGCTAAGATTGCTATTGCTGGCTACGGTGAGGATGATGT 699
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86344937400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5