BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313702
Length=1695
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30640.1 | Symbols: | Protein kinase family protein | chr1:... 2630 0.0
> AT1G30640.1 | Symbols: | Protein kinase family protein | chr1:10860655-10864700
FORWARD LENGTH=1922
Length=1922
Score = 2630 bits (1424), Expect = 0.0
Identities = 1587/1668 (95%), Gaps = 2/1668 (0%)
Strand=Plus/Plus
Query 7 ACGGAACCTACGAGGAGTTGGTTCCAGATACGGCAGCAGAAACCCGATAAATCCAGTCCT 66
||||| ||||| ||||| |||||||||||||||||||||||||| |||||||| || |||
Sbjct 240 ACGGAGCCTACAAGGAGCTGGTTCCAGATACGGCAGCAGAAACCGGATAAATCAAGCCCT 299
Query 67 ACTAAAAGGGGACAGGAGGGAAATGTGAAGAATATTGGCAGACCTCCTATGAATGATGCA 126
||||||| |||||| |||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 300 ACTAAAAAGGGACAAGAGGGAAATGTGAAGAATCTTGGGAGACCTCCTATGAATGATGCA 359
Query 127 CCATCTAATGCTACTAAACAGAAAGTTGCTGCGGCGAAGCAATATATCGAGAATCATTAT 186
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 360 CCATCTAATGCTACTAAACAGAAAGTTGCTGCAGCGAAGCAATATATCGAGAATCATTAT 419
Query 187 AAAACTCAGAAGAAGAGTCTCCAGGAAAGAAAAGAGCGTCGGAGCATCTTGGAGCAAAAC 246
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 420 AAAATTCAGAAGAAGAGTCTCCAGGAAAGAAAAGAGCGTCGGAGCATCTTGGAACAAAAC 479
Query 247 TTAGCCGATGCTGATGTTCCTGTTGAAGACAAGATGAATATATTAAAGAACTTTGAGAAA 306
|||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 480 CTAGCTGATGCTGATGTTACTGTTGAAGACAAGATGGATATATTAAAGAACTTTGAGAAA 539
Query 307 AAGGAAATGGAGTATATGCGTCTACAAAGACAGAAAATGGGGGTGGATGACTTTGAATTG 366
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 540 AAGGAAATGGAGTATATGCGTCTACAAAGACAGAAAATGGGGGTTGATGACTTTGAACTG 599
Query 367 CTGAGTATCATTGGCCGAGGTGCTTTCGGTGAGGTGAGAATTTGTAGAGAAAAATCTACT 426
|| || ||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 600 CTTAGCATCATTGGCCGGGGTGCTTTCGGTGAGGTGAGAATTTGTAAAGAAAAATCTACT 659
Query 427 GGCAGTGTGTATGCAATGAAAAAGCTAAAGAAATCCGAGATGCTTCGACGAGGGCAGGTG 486
|| || || ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 660 GGAAGCGTATATGCAATGAAAAAGTTAAAGAAATCCGAGATGCTTCGACGAGGGCAGGTG 719
Query 487 GAACATGTTAAGGCTGAAAGAAATGTGCTTGCAGAAGTGGATAGTCCTTTCATCGTCAAG 546
||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 720 GAACATGTTAAAGCTGAAAGAAATGTGCTTGCAGAAGTGGATAGCCCTTTCATTGTCAAG 779
Query 547 CTTTGCTACTCCTTCCAAGATGATGAGCATTTGTACCTTATTATGGAATATCTCCCTGGA 606
||||| ||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 780 CTTTGTTACTCTTTCCAAGATGATGAGCATTTGTATCTTATTATGGAATACCTCCCTGGA 839
Query 607 GGTGATATGATGACACTGCTGATGCGAAAGGATACCTTACGAGAAGATGAGACTCGATTT 666
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 840 GGTGATATGATGACACTGCTGATGCGAAAGGATACCTTACGGGAAGATGAGACTCGGTTT 899
Query 667 TATGTTGCACAGACAATTCTGGCTATTGAGTCTATCCATAAGCATAATTACGTCCACAGG 726
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TATGTTGCGCAGACAATTCTGGCTATTGAGTCTATCCATAAGCATAATTACGTCCACAGG 959
Query 727 GATATAAAGCCTGATAATCTATTGATTACTCGTAACGGCCATATCAAGCTTTCAGATTTT 786
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 960 GATATAAAGCCTGATAATTTATTGATTACTCGAAACGGCCATATCAAGCTTTCAGATTTT 1019
Query 787 GGATTGAGCAAGTCTCTGGAGAGCAAAAATTTTCCAGATTTTAAGGCGGAGCTTGTTGAC 846
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GGATTGAGCAAGTCTCTGGAAAGCAAAAATTTTCCAGATTTTAAGGCGGAGCTTGTTGAC 1079
Query 847 AGGAATGCAAAGCCTGCAGCAGAATATGACAGACTCTCCAAGCCTCCTTCTGCACCTAGG 906
|||| | ||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1080 AGGAGTACAAAGCCTGCAGCAGAACATGATAGACTCTCCAAGCCTCCTTCTGCACCTAGG 1139
Query 907 CGAACTCAGCAGGAACAGCTTTTACATTGGCAACAAAACAGAAGGACCCTGGCTTTTTCT 966
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 AGAACTCAGCAGGAACAGCTTTTACATTGGCAACAAAACAGAAGGACCCTGGCTTTTTCT 1199
Query 967 ACCGTAGGCACTCCTGATTACATTGCCCCTGAGGTGCTGCTGAAGAAAGGGTATGGAATG 1026
|| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 ACAGTAGGAACTCCCGATTACATTGCCCCTGAGGTGCTGCTGAAGAAAGGGTATGGAATG 1259
Query 1027 GAGTGTGATTGGTGGTCTCTTGGAGCAATCATGTTCGAGATGCTCGTAGGGTTTCCGCCA 1086
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1260 GAGTGTGATTGGTGGTCTCTTGGAGCAATCATGTTCGAGATGCTTGTAGGGTTTCCGCCA 1319
Query 1087 TTCTATTCCGAAGAGCCTTTGGCAACATGTAGAAAGATTGTAAACTGGAAAACCTGCTTG 1146
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TTCTATTCCGAAGAACCTTTGGCAACATGTAGAAAGATTGTAAACTGGAAAACCTGCTTG 1379
Query 1147 AAATTCCCTGATGAAGCTAAGCTCTCCATCGAGGTAAAAGATCTCATCCAAAGACTTCTC 1206
|| ||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||
Sbjct 1380 AAGTTCCCTGATGAAGCTAAGCTCTCCATCGAGGTAAAAGATCTTATCCGAAGACTGCTC 1439
Query 1207 TGCAATGTTGAACAGAGGCTTGGAACCAAAGGAGTTCATGAAATCAAAGCACACCCTTGG 1266
|||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1440 TGCAATGTCGAACAGAGGCTTGGGACCAAAGGAGTTCACGAAATCAAAGCACACCCTTGG 1499
Query 1267 TTTAGAGGAGTCGAATGGGAACGGCTATATGAGTCAAATGCTCCATATATACCACAAGTG 1326
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 TTTAGGGGAGTCGAATGGGAACGGCTATATGAGTCAAATGCTCCATATATACCACAAGTG 1559
Query 1327 AAGCATGAGCTTGATACCCAAAACTTTGAAAAGTTTGATGAGGCGCCATCTACTTGCCAA 1386
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1560 AAGCATGAGCTTGATACCCAAAACTTTGAAAAGTTTGATGAGGTACCATCTACTTGCCAA 1619
Query 1387 ACTTCTTCAAAGTCTGGCCCTTGGAGAAAGATGATCTCATCAAAAGATGTAAATTTTCTT 1446
||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||| |||
Sbjct 1620 ACTTCTTCAAAGTCTAGCCCTTGGAGAAAGATGATCTCATCCAAAGATGCAAATTTCCTT 1679
Query 1447 GGTTATACATTCAAGAATATTGAGATCGTTGATGAACACAATATTCCTGGCATGGCGGAA 1506
|||||||||||||||||| | ||||| |||||||||||| |||| |||||||||||||||
Sbjct 1680 GGTTATACATTCAAGAATCTGGAGATAGTTGATGAACACCATATCCCTGGCATGGCGGAA 1739
Query 1507 TTGAAGCGGAAGAGTAAGACAGCAAAGAAACCATCTCTCAAGACACTGTTCGAAACACCG 1566
||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct 1740 CTGAAGCGGAAGAGTAAGACAGCAAATAAACCATCTCTCAAAACACTCTTCGAAACACCA 1799
Query 1567 TATCCTTCTCCTGAGAATCAAGCCTTAAAGGATTTGCTTGATTCACCTATTTACTCTGAG 1626
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1800 TATCCTCCTTCTGAGAATCAAGCCTTAAAGGATTTGCTTGATTCACCTATTTACTCTGAA 1859
Query 1627 GGATCTAGAGGCTCTTCCGGATCACCATTTTCAC-ATCCGAATCAATC 1673
|| |||||||| |||||||||||||||||||||| | |||||||||||
Sbjct 1860 GGCTCTAGAGGGTCTTCCGGATCACCATTTTCACGA-CCGAATCAATC 1906
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83784709605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5