BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313705
Length=795
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30670.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1103 0.0
> AT1G30670.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:10879173-10880188 REVERSE
LENGTH=933
Length=933
Score = 1103 bits (597), Expect = 0.0
Identities = 740/806 (92%), Gaps = 22/806 (3%)
Strand=Plus/Plus
Query 1 ATGATTATCCCTGAAAAC-GACACG-TTCTTCTTCCAAGCA-CAACCGCAACATCAGCCA 57
||||||||||||| |||| |||| | ||||||||||||| | ||||||||||||||||||
Sbjct 1 ATGATTATCCCTG-AAACTGACA-GTTTCTTCTTCCAAG-AGCAACCGCAACATCAGCCA 57
Query 58 TTGTATCACGACGAAGCTCTTTCACCGTCTCTCTTCAGGTTTGATCACTTTGATCATTTC 117
||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 58 TTGTATCCCGACGAAGCTCTTTCACCGTCTCTCTTCGGGTTTGATCACTATGATCATTTC 117
Query 118 TACGATTCGTTTCTTCCACCTCAAGAAATCTTTCTCCCTATCCCTAAGACCCAAGTCTTC 177
||||| |||||||||||| ||||||||||||| || |||| ||||||||||| |||||||
Sbjct 118 TACGAGTCGTTTCTTCCATCTCAAGAAATCTTCCTTCCTAGCCCTAAGACCCGAGTCTTC 177
Query 178 AATGAGTCACAGGACTTAGATTCCTTCTTCCACACGCCTAAACACCA-AAACCTCATAAA 236
|| ||||||||||| ||||||| | |||||||||||| |||||||| ||| ||||| |
Sbjct 178 AACGAGTCACAGGAATTAGATT-C--CTTCCACACGCCAAAACACCAGAAA-CTCATTGA 233
Query 237 CTCCAGCTTCCATTTCAACACTCACGACCCTTTTTCCCCGAGACCT-AACTCT-A--ACC 292
|||||||||||||||||||| |||||||||||||||||| || ||| || ||| | |||
Sbjct 234 CTCCAGCTTCCATTTCAACAGTCACGACCCTTTTTCCCCTAGCCCTGAA-TCTAATTACC 292
Query 293 TC-TGTGATTCTTACATCACCGAAGCTGCTAACATTTCCGAGTTTCGAGTTCCTGATTTC 351
|| || |||||||||||||| |||||| | ||||||||| |||||| || ||||||||||
Sbjct 293 TCTTG-GATTCTTACATCACAGAAGCTTCCAACATTTCCAAGTTTCAAGCTCCTGATTTC 351
Query 352 TCATCGACGTTCAAGGTTGGGTGGACTGAACAAGGCGACACCAAGAAGCGAGAGCTATCT 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 TCATCGACGTTCAAGGTTGGGTGGACTGAACAAGGCGACACCAAGAAGCGAGAGCTATCT 411
Query 412 GCTCAGAGCATCGCAGCACGAAAAAGGAGAAGAAGAATCACAGAGAAGACTCAAGAGCTT 471
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 412 GCTCAGAGCATCGCAGCACGAAAGAGGAGAAGAAGAATCACAGAGAAGACTCAAGAGCTG 471
Query 472 GCGAAA-CTAATTCCTGGAAGTCAGAAACACAACACTGCCGAAATGTTCCATGCCGCAGC 530
| |||| ||||| |||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 472 G-GAAAACTAATCCCTGGAAGCCAGAAACACAACACTGCCGAAATGTTCAATGCCGCAGC 530
Query 531 TAAATACGTCAAGTTCTTGCAGGCTCAAACTGAGATTCTCCAGCTGAAGCAGAGCAAAAT 590
|||||| |||||||||||||||||||||| |||||||||||| |||||||||| ||||||
Sbjct 531 TAAATATGTCAAGTTCTTGCAGGCTCAAATTGAGATTCTCCAACTGAAGCAGACCAAAAT 590
Query 591 ACAGACTCGGGATAGTTCAAAGGTGGGAAGAGAAATACAGTTTTTGCTTGCCTCTCAAGA 650
||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 591 GCAGACTCTGGATAGTTCAAAGGTGGGAAGAGAAATGCAGTTTTTGCTTGGTTCTCAAGA 650
Query 651 AATCCAGGAGAAGCTATCGACAGAAGAAGTGTGTGTGGTTCCAAGGGAAATGGTTCAAGT 710
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 651 AATCCAGGAGAAGCTATCTACAGAAGAAGTGTGTGTGGTTCCAAGGGAAATGGTTCAAGT 710
Query 711 CCTGAAAGCCGAAGAATGCATCTTGAGAAACCCTAAGCTTTCTCGAGACATCAATAAGTT 770
||| |||||||||||||||||||||| |||||||||| ||||||||||||| || || ||
Sbjct 711 CCTAAAAGCCGAAGAATGCATCTTGACAAACCCTAAGATTTCTCGAGACATTAACAAATT 770
Query 771 GTTGTCAACAAATCTGACT-AATTAG 795
||||||||||||||||| | ||||||
Sbjct 771 GTTGTCAACAAATCTGA-TGAATTAG 795
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38680293190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5