BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313743
Length=735
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31040.1 | Symbols: | PLATZ transcription factor family pro... 1158 0.0
> AT1G31040.1 | Symbols: | PLATZ transcription factor family protein
| chr1:11069793-11072291 REVERSE LENGTH=841
Length=841
Score = 1158 bits (627), Expect = 0.0
Identities = 688/718 (96%), Gaps = 2/718 (0%)
Strand=Plus/Plus
Query 19 gaagaagaagaagagatgatgatgatgatAGCAACAAAACCTGCATGGCTTGAAGGATTA 78
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 125 GAAGAAGAAGAAGAGATGATGATGATGATGGCAACGAAACCTGCATGGCTTGAAGGTTTA 184
Query 79 ATGGCGGAAACTTTCTTCTCAAGCTGTGGAATCCACGAAACTCGCCGTAAAAGCGAAAAG 138
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 185 ATGGCGGAGACTTTCTTCTCAAGCTGTGGAATCCACGAAACTCGCCGTAAAAGTGAAAAG 244
Query 139 AACGTTTTTTGCTTACTCTGTTGTCTCAGTGTTTGTCCTCACTGTCTCCCTGCACATCGC 198
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 245 AACGTTTTTTGCTTACTCTGTTGTCTCAGTGTTTGTCCTCACTGTCTCCCTTCTCATCGC 304
Query 199 TCTCATCCTCTTCTTCAGGTGAGACGATATGTATACCACGACGTCGTTCGGCTGAGTGAT 258
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 305 TCTCATCCTCTTCTTCAGGTGAGACGATACGTATACCACGACGTCGTTCGGTTGAGTGAT 364
Query 259 CTTGAGAAGCTCATAGATTGTTCATATGTTCAGCCATATACAATTAACGGAGCCAAAGTG 318
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 365 CTTGAGAAGCTCATAGATTGTTCATATGTTCAGCCATATACAATTAATGGAGCCAAAGTG 424
Query 319 ATATTCATAAATCAAAGACCACAATCAAGAGCTAAGGTTTCTTCAAATGTTTGCTTCACT 378
|||||| |||| ||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 425 ATATTCTTAAACCAAAGACAACAATCACGAGCTAAGGTTTCTTCAAATGTTTGCTTCACT 484
Query 379 TGTGATAGAATCCTCCAAGAACCATTCCACTTTTGTTCCCTCTCTTGCAAGGTGGATTAT 438
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 TGTGATAGAATCCTTCAAGAACCATTCCACTTTTGTTCCCTCTCTTGCAAGGTGGATTAT 544
Query 439 TTATCATATCAAGGAGATGATTTATCAAGCGTTCTCTATAGAATTGATGAATCGGACTTC 498
|||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||
Sbjct 545 TTATCATATCAAGGAGATGATTTATCAAGCATTCTCTATAGAATTGATGAATCAGATTTT 604
Query 499 ACGTTCGAGGGTTTGAGAATGGACGGACATGATCAGCTCGGAGAAATATCGACGATGGAG 558
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 605 ACGTTCGAGGGTTTGAGAATGGACGGACATGATCAGCTCGGAGAGATATCGACGATGGAG 664
Query 559 GATGCAGAGGATATAATGGTAATTTCAGATGAATCAGAGCAAGGTAACAATAGTCATAA- 617
|||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 665 GATGGGGAGGATATACTGGTAATTTCAGATGAATCTGAGCAAGGTAACAATAGTCATAAG 724
Query 618 aagagagaagaagaagaacaagaagaagaagcaagagaaCAATTACTTGCCTGGGATGGT 677
|| |||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct 725 AA-AGAGAAGAAGAAGAGCAAGAAGAAGAAGCCAGAGAGCAATTACTTGCCTGGGATGGT 783
Query 678 TCTTTCATCACTTGGTAATAGAAGGAAAGGTGCTCCTCATAGGGCTCCTTTTTCATAA 735
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 784 TCTTTCATCACTTGGTAATAGAAGAAAAGGTGCTCCTCATAGGGCTCCTTTTTCATAA 841
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35666244370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5