BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313754
Length=2343
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31740.1 | Symbols: BGAL15 | beta-galactosidase 15 | chr1:11... 3013 0.0
AT2G04060.1 | Symbols: | glycosyl hydrolase family 35 protein ... 532 4e-150
> AT1G31740.1 | Symbols: BGAL15 | beta-galactosidase 15 | chr1:11365285-11369908
REVERSE LENGTH=2361
Length=2361
Score = 3013 bits (1631), Expect = 0.0
Identities = 1842/1945 (95%), Gaps = 10/1945 (1%)
Strand=Plus/Plus
Query 4 ATGATTTCTCTAAAG-TTTCTTTTGTGTTGTCTCTTAGTGAGTAGTTGTGCATATGCCAC 62
||| ||||||| ||| ||| ||||||||||| | ||||| |||||||||||||| |||||
Sbjct 70 ATGGTTTCTCT-AAGTTTTATTTTGTGTTGTGTTTTAGTAAGTAGTTGTGCATACGCCAC 128
Query 63 AATCGTCTCTCACGACGGCCGTGCCATCACTATTGATGGCCATCGCCGTGTTCTTCTCTC 122
|||||||||||| || || |||||||||||||||||||| ||||| || |||||||||||
Sbjct 129 AATCGTCTCTCATGATGGTCGTGCCATCACTATTGATGGTCATCGTCGAGTTCTTCTCTC 188
Query 123 GGGTTCTATCCATTACCCGAGAAGCACCACTGAGATGTGGCCGGATCTTATAAAGAAGGG 182
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 189 TGGTTCTATCCATTATCCTAGAAGCACCACTGAGATGTGGCCGGATCTTATAAAGAAGGG 248
Query 183 AAAAGAAGGAGGTCTTGATGCGATCGAGACTTATGTGTTTTGGAATGCACATGAACCTAC 242
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 249 CAAAGAAGGAAGTCTTGATGCGATCGAGACTTATGTTTTTTGGAATGCACATGAACCTAC 308
Query 243 TCGTCGTCAGTATGATTTCTCTGGAAATCTAGATCTTATTCGGTTCTTGAAAACCATTCA 302
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 TCGTCGTCAATATGATTTCTCTGGAAATCTAGATCTTATTCGGTTCTTGAAAACCATTCA 368
Query 303 AGATGAAGGAATGTATGGAGTTCTTCGTATTGGACCATACGTTTGCGCTGAGTGGAACTA 362
| ||||||||||||||||||||||||| || |||||||| |||||||| |||||||||||
Sbjct 369 AAATGAAGGAATGTATGGAGTTCTTCGCATAGGACCATATGTTTGCGCAGAGTGGAACTA 428
Query 363 CGGAGGATTTCCAGTGTGG-TTGCACAACATGCCCGGAATGGAATTTAGAACTACTAATA 421
||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||
Sbjct 429 CGGAGGATTTCCAGTGTGGCTT-CACAACATGCCCGGAATGGAATTCAGAACTACTAATA 487
Query 422 CTGCATTTATGAATGAGATGCAAAATTTTACGACTATGATAGTAGAAATGGTCAAGAAAG 481
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 488 CTGCGTTTATGAATGAGATGCAAAATTTTACGACAATGATAGTAGAAATGGTCAAGAAAG 547
Query 482 AGAAGCTATTTGCATCACAAGGAGGTCCAATTATCCTTGCTCAGATTGAAAATGAGTATG 541
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 548 AGAAGCTTTTTGCATCACAAGGAGGTCCAATTATCCTTGCTCAGATTGAGAATGAATATG 607
Query 542 GAAATGTGATTGGATCATACGGAGAAGCCGGTAAGGCATATA-TCAAGTGGTGTGCAAAC 600
||||||||||||||||||| |||||||| ||||| ||||||| || ||||||||||||||
Sbjct 608 GAAATGTGATTGGATCATATGGAGAAGCGGGTAAAGCATATATTC-AGTGGTGTGCAAAC 666
Query 601 ATGGCTAATTCTCTTGATGTTGGTGTTCCATGGATCATGTGTCAACAAGATGATGCTCCT 660
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 667 ATGGCTAATTCTCTTGATGTTGGTGTTCCGTGGATCATGTGTCAACAAGATGATGCTCCT 726
Query 661 CAACCTATGTTAAACACATGCAATGGTTATTATTGTGACAACTTTACACCAAACAACCCC 720
||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 727 CAACCAATGTTAAACACATGCAATGGTTATTATTGTGATAACTTTTCACCAAACAACCCC 786
Query 721 AACACTCCAAAAATGTGGACTGAGAATTGGACCGGCTGGTATAAGAATTGGGGAGGTAAA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 AACACTCCAAAAATGTGGACTGAGAATTGGACCGGCTGGTATAAGAATTGGGGAGGTAAA 846
Query 781 GATCCTCACAGAACAACCGAAGATGTTGCTTTTGCCGTTGCAAGATTCTTCCAAAGAGGA 840
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
Sbjct 847 GATCCTCACAGAACAACCGAAGATGTTGCTTTTGCCGTTGCAAGATTTTTCCAAAAAGAA 906
Query 841 GGAACTTTCCAGAACTACTACATGTACCATGGGGGCACCAACTTTGATAGAACCGCAGGT 900
||||||||||||||||| |||||||| ||||| || ||||||||||||||||| || |||
Sbjct 907 GGAACTTTCCAGAACTATTACATGTATCATGGAGGTACCAACTTTGATAGAACTGCGGGT 966
Query 901 GGTCCGTACATCACAACAACATATGATTACGATGCTCCTCTTGATGAATTTGGTAATTTG 960
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 967 GGTCCGTACATCACAACAACATATGATTACGATGCTCCTCTTGACGAATTTGGTAATTTG 1026
Query 961 AACCAACCAAAATACGGACACCTCAAACAGCTTCACGATGTTCTTCACGCTATGGAGAAA 1020
||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 1027 AACCAACCAAAATACGGACACCTGAAACAGCTTCATGATGTTCTTCATGCTATGGAGAAA 1086
Query 1021 ACTCTCACGTATGGAAACATTTCCACCGTTGATTTTGGAAACTTAGTCACGGCAACGGTT 1080
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1087 ACTCTCACTTATGGAAACATTTCCACCGTTGATTTTGGAAATTTAGTCACGGCAACAGTT 1146
Query 1081 TATAAAACAGAAGAAGGATCAAGTTGTTTCATTGGAAATGTAAATGAAACTTCAGATGCG 1140
||| |||||||||||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 1147 TATCAAACAGAAGAAGGATCAAGTTGTTTCATTGGAAACGTTAATGAAACGTCAGATGCA 1206
Query 1141 AAAATCAATTTCCAAGGAACATTTTATGATGTCCCGGCTTGGTCTGTGAGCATTTTACCG 1200
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1207 AAAATCAATTTCCAAGGAACATCTTATGATGTCCCGGCTTGGTCTGTGAGCATTTTACCG 1266
Query 1201 GATTGCAAAACTGAGACTTATAATACCGCCAAGATTAACACTCAAACTTCGGTGATGGTT 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 GATTGCAAAACTGAGACTTATAATACCGCCAAGATTAACACTCAAACTTCGGTGATGGTT 1326
Query 1261 AAGAAAGCGAATGAAGCTGAGAATGAGCCTTCGACTTTGAAATGGTCATGGAGACCAGAG 1320
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1327 AAGAAAGCGAATGAAGCTGAGAACGAGCCTTCGACTTTGAAATGGTCATGGAGACCAGAG 1386
Query 1321 AACATAGACAATGTCCTCTTGAAAGGAAAAGGAGAGTCTACAATGAGACAATTGTTTGAT 1380
||||| |||| ||||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct 1387 AACATCGACAGTGTCCTCTTGAAAGGGAAAGGAGAATCTACAATGAGACAGTTGTTTGAT 1446
Query 1381 CAGAAAGTAGTAAGCAATGACGAAAGCGATTATCTTTGGTACATGACTACGGTTAATATC 1440
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1447 CAGAAAGTAGTAAGCAATGACGAAAGTGATTATCTTTGGTACATGACTACGGTTAATCTC 1506
Query 1441 AAAGAACAAGATCCGGTTTGGGGGAAAAACATGTCTCTTCGTATTAATAGTACTGCTCAT 1500
||||||||||||||||||| ||||||||| |||||||||||||| || ||||||||||||
Sbjct 1507 AAAGAACAAGATCCGGTTTTGGGGAAAAATATGTCTCTTCGTATCAACAGTACTGCTCAT 1566
Query 1501 GTTCTTCACGCTTTTGTGAATGGACAGCATATTGGTAATTATCGCGCAGAAAATGGAAAG 1560
||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||
Sbjct 1567 GTTCTTCACGCTTTTGTCAATGGACAACATATTGGTAATTATCGCGTTGAAAATGGAAAG 1626
Query 1561 TTTCACTATGTTTTCGAGCAAGACGCGAAA-TTCAACCCCGGTGCTAACGTCATCACGCT 1619
|||||||||||||| ||||||||||| ||| |||||||| |||||||| ||||| || ||
Sbjct 1627 TTTCACTATGTTTTTGAGCAAGACGC-AAAGTTCAACCCTGGTGCTAATGTCATTACTCT 1685
Query 1620 CCTTAGCATAACCGTAGGCCTTCCGAACTATGGTGCTTTCTTCGAAAACGTTCCGGCTGG 1679
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1686 CCTTAGCATAACCGTAGGCCTTCCGAACTATGGTGCTTTCTTCGAAAACTTTTCGGCTGG 1745
Query 1680 AATCACTGGACCCGTTTTTATCATTGGAAGAAATGGTGATGAAACCATAGTAAAAGACTT 1739
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 1746 AATCACTGGACCCGTTTTTATCATTGGAAGAAATGGTGATGAAACTATAGTTAAAGATTT 1805
Query 1740 GTCTACTCATAAATGGAGCTACAAAACTGGTTTAAGCGGGTTTGAGAACCAACTCTTTAG 1799
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1806 GTCTACTCATAAATGGAGTTACAAAACTGGTTTAAGCGGGTTTGAGAACCAACTCTTTAG 1865
Query 1800 TTCAGAATCGCCTTCTACATGGTCAGCTCCTTTGGGAAGTGAACCAGTTGTGGTCGATCT 1859
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1866 TTCAGAATCACCTTCGACATGGTCAGCTCCTTTGGGAAGTGAACCAGTTGTGGTCGATCT 1925
Query 1860 TTTGGGACTTGGAAAAGGAACGGCTTGGATCAATGGGAACAACATTGGACGTTATTGGCC 1919
|||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 1926 TTTGGGACTTGGAAAAGGAACGGCTTGGATCAATGGAAATAACATTGGACGTTACTGGCC 1985
Query 1920 AGCTTTTCT-TGCAGATATTGATGG 1943
||||||||| | |||| || |||||
Sbjct 1986 AGCTTTTCTCT-CAGACATAGATGG 2009
Score = 516 bits (279), Expect = 4e-145
Identities = 333/359 (93%), Gaps = 4/359 (1%)
Strand=Plus/Plus
Query 1987 GATGGAGACAACACGTTGGTGTTGTTTGAAGAGATTGGAGGAAACCCATCACTTGTCAAT 2046
|||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 2005 GATGGAGACAACACCTTGGTTTTGTTTGAAGAGATTGGAGGAAACCCCTCACTTGTCAAT 2064
Query 2047 TTTCAGACAATTGGAGTCGGAAATGTTTGTGCAAATGTCTATGAGAAGAACGTTCTTGAG 2106
||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 2065 TTTCAAACAATTGGAGTTGGAAGTGTTTGTGCAAATGTCTATGAGAAGAACGTTCTTGAG 2124
Query 2107 CTTTCGTGCAATGGAAAACCCATTTCCT-CCATCAAATTTGCTTCTTTTGGTAACCCGGG 2165
||||| |||||||||||||| |||| || |||||||||||||||| ||||||||||| ||
Sbjct 2125 CTTTCATGCAATGGAAAACCGATTT-CTGCCATCAAATTTGCTTCCTTTGGTAACCCAGG 2183
Query 2166 AGGCAATTGCGGATCCTTTGAGAAAGGAACTTGTGAAGCAAGTAACGATGCTGCCGCTAT 2225
|||| |||||||||| |||||||||||||||||||||||||| ||| ||||||| |||||
Sbjct 2184 AGGCGATTGCGGATCTTTTGAGAAAGGAACTTGTGAAGCAAGCAACAATGCTGCGGCTAT 2243
Query 2226 CCTCACCCAAGAATGTGTTGGAAAAGAAAAGTGTTCCATTGATGTCTCCGAGAAAAAGTT 2285
||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||
Sbjct 2244 CCTCACCCAAGAATGTGTTGGAAAAGAAAAGTGTTCCATTGATGTTTCCGAGGATAAGTT 2303
Query 2286 TGGAGCAGCGGACTGTGGTGGTCTTG-CTAAGAGACTTGCTGTCGAAGCTATTTGCTAG 2343
|||||||||||| ||||||| | ||| |||||||||| || ||||||||||||||||||
Sbjct 2304 TGGAGCAGCGGAGTGTGGTGCT-TTGGCTAAGAGACTCGCCGTCGAAGCTATTTGCTAG 2361
> AT2G04060.1 | Symbols: | glycosyl hydrolase family 35 protein
| chr2:1342137-1345164 REVERSE LENGTH=1410
Length=1410
Score = 532 bits (288), Expect = 4e-150
Identities = 349/379 (92%), Gaps = 1/379 (0%)
Strand=Plus/Plus
Query 1390 GTAAGCAATGACGAAAGCGATTATCTTTGGTACATGACTACGGTTAATATCAAAGAACAA 1449
||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||
Sbjct 463 GTAAGCAATGACGAAAGTGATTTTCTTTGGTACATGACTACGGTTAATCTCAAAGAACAA 522
Query 1450 GATCCGGTTTGGGGGAAAAACATGTCTCTTCGTATTAATAGTACTGCTCATGTTCTTCAC 1509
||||||| |||||| ||||| |||||||||||||| || |||||||||||||||||||||
Sbjct 523 GATCCGGCTTGGGGAAAAAATATGTCTCTTCGTATCAACAGTACTGCTCATGTTCTTCAC 582
Query 1510 GCTTTTGTGAATGGACAGCATATTGGTAATTATCGCGCAGAAAATGGAAAGTTTCACTAT 1569
| |||||| |||||||| |||| |||||||||||||| |||||||||||||||||||||
Sbjct 583 GGTTTTGTCAATGGACAACATACTGGTAATTATCGCGTTGAAAATGGAAAGTTTCACTAT 642
Query 1570 GTTTTCGAGCAAGACGCGAAATTCAACCCCGGTGCTAACGTCATCACGCTCCTTAGCATA 1629
||||| |||||||||||||| |||||||| |||| ||| ||||| || ||||||||| ||
Sbjct 643 GTTTTTGAGCAAGACGCGAAGTTCAACCCTGGTGTTAATGTCATTACCCTCCTTAGCGTA 702
Query 1630 ACCGTAGGCCTTCCGAACTATGGTGCTTTCTTCGAAAACGTTCCGGCTGGAATCACTGGA 1689
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 703 ACCGTAGACCTTCCGAACTATGGTGCTTTCTTCGAAAACGTCCCGGCTGGAATCACTGGA 762
Query 1690 CCCGTTTTTATCATTGGAAGAAATGGTGATGAAACCATAGTAAAAGACTTGTCTACTCAT 1749
||||||||||||||||||||||||||||||||||| | |||||| | ||||||||||||
Sbjct 763 CCCGTTTTTATCATTGGAAGAAATGGTGATGAAACTGTTGTAAAATATTTGTCTACTCAT 822
Query 1750 AAATGGAGCTACAAAACTG 1768
|| ||||||||||||||||
Sbjct 823 AA-TGGAGCTACAAAACTG 840
Score = 477 bits (258), Expect = 2e-133
Identities = 326/357 (91%), Gaps = 12/357 (3%)
Strand=Plus/Plus
Query 877 ACCAACTTTGATAGAACCGCAGGTGGTCCGTACATCACAACAACATATGATTACGATGCT 936
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 82 ACCAACTTTGATAGAACCGCGGGTGGTCCGTTCATCACAACAACATATGATTACGATGCT 141
Query 937 CCTCTTGATGAATTTGGTAATTTGAACCAACCAAAATACGGACACCTCAAACAGCTTCAC 996
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 142 CCTCTTGACGAATTTGGTAATTTGAACCAACCAAAATACGGACACCTGAAACAGCTTCAT 201
Query 997 GATGTTCTTCACGCTATGGAGAAAACTCTCACGTATGGAAACATTTCCACCGTTGATTTT 1056
|||||| |||| |||||||||||||||||||| |||||||| |||||||||| |||||||
Sbjct 202 GATGTTTTTCATGCTATGGAGAAAACTCTCACTTATGGAAATATTTCCACCGCTGATTTT 261
Query 1057 GGAAACTTAGTCACGGCAACGGTTTATAAAACAGAAGAAGGATCAAGTTGTTTCATTGGA 1116
||||| ||||||| | ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 262 GGAAATTTAGTCATGACAACGGTTTATCAAACAGAAGAAGGATCAAGTTGTTTCATTGGA 321
Query 1117 AATGTAAATGAAACTTCAGATGCGAAAATCAATTTCCAAGGAACATTTTATGATGTCCCG 1176
|| || |||| | | | ||| |||||||||||||||||| |||||||||||||
Sbjct 322 AACGTGAATG---C---A-A----AAA-TCAATTTCCAAGGAACATCTTATGATGTCCCG 369
Query 1177 GCTTGGTCTGTGAGCATTTTACCGGATTGCAAAACTGAGACTTATAATACCGCCAAG 1233
||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 370 GCTTGGTATGTGAGCATTTTACCGGATTGCAAAACTGAGTCTTATAATACCGCCAAG 426
Score = 126 bits (68), Expect = 8e-28
Identities = 88/98 (90%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 1824 AGCTCCTTTGGGAAGTGAACCAGTTGTGGTCGATCTTTTGGGACTTGGAAAAGGAACGGC 1883
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 852 AGCTCCTTTGGGAAGTGAACCAGTTGTGGTCGATCTTTTGGGATTTGGAAAAGGAAAGGC 911
Query 1884 TTGGATCAATGGGAACAACATTGGACGTTATTGGCCAG 1921
|| |||||||| || ||| ||| ||||| |||||||
Sbjct 912 TTCGATCAATGAAAATTACACTGGCCGTTACTGGCCAG 949
Score = 119 bits (64), Expect = 1e-25
Identities = 68/70 (97%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 601 ATGGCTAATTCTCTTGATGTTGGTGTTCCATGGATCATGTGTCAACAAGATGATGCTCCT 660
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACTAATTCTCTTGATGTTGGTGTTCCATGGATCATGTGTCAACAAGATGATGCTCCT 60
Query 661 CAACCTATGT 670
||||| ||||
Sbjct 61 CAACCAATGT 70
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116314662765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5