BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313807
Length=948
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32350.1 | Symbols: AOX1D | alternative oxidase 1D | chr1:11... 1354 0.0
> AT1G32350.1 | Symbols: AOX1D | alternative oxidase 1D | chr1:11666977-11668690
REVERSE LENGTH=1338
Length=1338
Score = 1354 bits (733), Expect = 0.0
Identities = 845/900 (94%), Gaps = 3/900 (0%)
Strand=Plus/Plus
Query 49 TCCGGTTTAGGTGTTGGACCAGGAATCAGAGGACATGTCATCAGCCACTTGTCCACTGTT 108
||||||||||| |||| |||| |||| |||||| |||| ||||||||| ||| ||||
Sbjct 182 TCCGGTTTAGGAATTGG---AGGATTCAGGGGACATCTCATTAGCCACTTGCCCAATGTT 238
Query 109 CGATTTTTGAGTTCTGACACGTCGTCTCCGGCAAGTGGGAATAACCAGCCGGAAAAGCCT 168
|| | ||||| ||||||||||| ||||||| |||||||||||||||||| ||||| |||
Sbjct 239 CGGCTATTGAGCTCTGACACGTCATCTCCGGTAAGTGGGAATAACCAGCCAGAAAATCCT 298
Query 169 GTCCAAACGGCGGACGGCAAAGTCATATCCACTTATTGGGGTATACCTCCGGCTAAGATC 228
||| |||||| || || ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 299 ATCCGAACGGCCGATGGTAAAGTTATATCCACTTATTGGGGTATACCTCCTACTAAGATC 358
Query 229 ACTAAACCGGACGGTTCAGCTTGGAAGTGGAATTGTTTTCAGCCATGGGATTCATACAAA 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 ACTAAACCGGACGGTTCAGCTTGGAAGTGGAATTGTTTTCAGCCATGGGATTCATACAAA 418
Query 289 CCGGACGTATCCATTGATGTAACCAAGCATCATAAACCCTCCAATTTCACTGACAAATTC 348
||||| || |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 419 CCGGATGTGTCCATTGATGTAACTAAACATCATAAACCCTCCAATTTCACTGACAAATTC 478
Query 349 GCATATTGGACCGTTCAAACTCTGAAAATACCGGTTCAACTATTTTTCCAGAGGAAGCAC 408
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 479 GCATATTGGACCGTTCAAACTCTGAAAATACCGGTTCAACTATTTTTTCAGAGGAAGCAC 538
Query 409 ATGTGCCATGCGATGTTGCTGGAGACAGTGGCGGCGGTTCCGGGAATGGTCGGAGGGATG 468
|||||||||||||||||||| ||||| ||||| ||||| |||||||||||||| ||||||
Sbjct 539 ATGTGCCATGCGATGTTGCTAGAGACGGTGGCTGCGGTGCCGGGAATGGTCGGGGGGATG 598
Query 469 CTTTTGCACTTGAAATCTCTCCGGAGATTTGAACATAGCGGCGGATGGATCAAAGCTTTG 528
|||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 599 CTTTTGCACTTGAAATCTCTCCGGAGGTTCGAACATAGCGGGGGATGGATCAAAGCTTTG 658
Query 529 CTCGAAGAGGCCGAGAACGAGCGTATGCATCTCATGACTTTCATCGAACTTTCACAACCC 588
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CTCGAAGAGGCTGAGAACGAGCGTATGCATCTCATGACTTTCATCGAACTTTCACAACCC 718
Query 589 AAATGGTACGAACGGGCTATTGTGTTCACGGTCCAAGGCGTTTTCTTCAACGCATATTTC 648
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AAATGGTACGAACGAGCGATTGTGTTCACGGTCCAAGGCGTTTTCTTCAACGCATATTTC 778
Query 649 TTAGCTTATGTGATTTCTCCAAAACTTGCTCATCGTATCACTGGATACCTAGAAGAAGAG 708
| |||||||| ||||| || ||||||||||||||||||||||||||| |||||||||||
Sbjct 779 CTGGCTTATGTAATTTCACCCAAACTTGCTCATCGTATCACTGGATACTTAGAAGAAGAG 838
Query 709 GCTGTGAATTCTTACACCGAATTTCTCAAAGACATTGATGCCGGAAAATTCGAAAACTCG 768
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GCTGTAAATTCTTACACTGAATTTCTCAAAGACATTGATGCCGGAAAATTCGAAAACTCG 898
Query 769 CCAGCTCCAGCCATCGCAATCGATTACTGGCGGTTGCCTAAAGACGCAACGCTTAGGGAT 828
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 899 CCAGCTCCAGCCATCGCAATCGATTACTGGCGGTTGCCTAAAGATGCAACGCTTAGGGAT 958
Query 829 GTGGTTTATGTTATCCGAGCTGACGAAGCTCACCACCGAGATATTAACCACTATGCTTCG 888
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 959 GTGGTTTATGTTATACGAGCTGACGAAGCTCACCACCGTGATATTAACCACTATGCTTCG 1018
Query 889 GATATACAATTTAAAGGACATGAACTCAAGGAAGCTCCGGCTCCTATTGGATATCATTAA 948
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GATATACAATTCAAAGGACATGAACTCAAGGAAGCTCCGGCTCCTATTGGATATCATTAA 1078
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46366117681
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5