BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313816
Length=1848
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32450.1 | Symbols: NRT1.5 | nitrate transporter 1.5 | chr1:... 2955 0.0
> AT1G32450.1 | Symbols: NRT1.5 | nitrate transporter 1.5 | chr1:11715150-11719970
REVERSE LENGTH=2195
Length=2195
Score = 2955 bits (1600), Expect = 0.0
Identities = 1767/1849 (96%), Gaps = 5/1849 (0%)
Strand=Plus/Plus
Query 1 ATGTCTTGCCTAGAGATTTATAACAAAGACACAATgaagaagaaagaagaagaagaagaa 60
|||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||
Sbjct 164 ATGTCTTGCCTAGAGATTTATAACAAAGACACGATGAAGAAGAAAGAAG--G-AGAAGAA 220
Query 61 gaaACAAGAGATGGAACAGTGGATTACTATGGTCGTCCCTCTATTCGTTCTAACTCAGGC 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 GAAACAAGAGATGGGACAGTGGATTACTATGGTCGTCCCTCTATTCGTTCTAACTCAGGC 280
Query 121 CAATGGGTTGCTGGCATCGTCATTCTCCTGAACCAGGGGTTGGCGACACTAGCCTTCTTT 180
|||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||
Sbjct 281 CAATGGGTTGCTGGCATCGTCATTCTTCTGAACCAGGGGCTGGCTACACTAGCCTTCTTT 340
Query 181 GGAGTTGGAGTGAATTTGGTGCTCTTCCTAACGCGCGTTTTGCAGCAGAATAACGCAGAC 240
|||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 341 GGAGTTGGAGTGAACTTGGTGCTCTTCCTAACTCGCGTTTTGCAGCAGAACAACGCAGAC 400
Query 241 GCAGCGAACAACGTTAGCAAATGGACAGGGACTGTTTATATCTTCTCATTAGTTGGAGCG 300
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 401 GCAGCTAACAACGTTAGCAAATGGACAGGGACTGTTTATATCTTCTCATTGGTTGGAGCG 460
Query 301 TTTCTCAGCGATTCGTATTGGGGTCGTTACAAGACTTGTGCTATATTTCAAGTCATTTTT 360
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 461 TTTCTCAGCGATTCGTATTGGGGTCGTTACAAGACTTGTGCTATCTTCCAAGTCATTTTT 520
Query 361 GTCATTGGACTTTCATCGCTATCGCTATCATCGTACATGTTCTTGATTAGACCACGAGGT 420
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 521 GTCATTGGACTTTCATCGCTATCGCTATCATCATACATGTTCTTGATTAGACCAAGAGGT 580
Query 421 TGCGGGGATGAAGTCACTCCTTGTGGTTCGCATTCCATGATGGAGATCACAATGTTCTAC 480
|| ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 581 TGTGGGGACGAAGTCACGCCTTGTGGTTCACATTCCATGATGGAGATCACAATGTTCTAC 640
Query 481 TTTTCGATCTACTTGATCGCATTGGGATATGGCGGTTACCAACCAAACATTGCAACGCTT 540
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 TTCTCGATCTACTTGATCGCATTGGGATATGGCGGTTACCAACCAAACATTGCAACGCTT 700
Query 541 GGAGCGGATCAATTCGATGAGGAGCATCCTAAAGAAGGGTACTCAAAGATTGCGTTTTTC 600
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 701 GGAGCGGATCAGTTCGATGAGGAGCATCCTAAAGAAGGGTACTCGAAGATTGCGTTTTTC 760
Query 601 AGCTACTTCTACCTTGCTTTGAACCTCGGATCACTCTTTTCAAACACCATCTTGGGGTAT 660
|||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct 761 AGCTACTTTTACCTTGCTTTAAACCTCGGATCGCTCTTTTCGAACACCATCTTGGGGTAT 820
Query 661 TTTGAGGATGAGGGAATGTGGGCACTTGGGTTTTGGGCGTCCACTGGTTCTGCTATCATT 720
|||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||
Sbjct 821 TTTGAGGATGAGGGAATGTGGGCACTCGGGTTTTGGGCATCCACTGGCTCTGCTATCATT 880
Query 721 GGTTTGATTCTTTTCCTCGTTGGAACACCGAGATACCGATATTTTATGCCCACCGGGAAT 780
|| |||||||||||||| |||||||||||||||||||||||||| | |||||| ||||||
Sbjct 881 GGGTTGATTCTTTTCCTTGTTGGAACACCGAGATACCGATATTTCAAGCCCACGGGGAAT 940
Query 781 CCTCTTTCGAGGTTTTGCCAAGTTTTGGTCGCTGCAACGAAGAAATCATCGGTGGAGGCG 840
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 CCTCTTTCGAGGTTTTGCCAAGTTTTGGTCGCTGCAACGAAGAAATCATCGGTGGAGGCA 1000
Query 841 CCATTAAGAGGGAGAGAGGAGATGTATGATGGAGACAGCCAAGGGAAAAATGTTTCAGAA 900
||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||
Sbjct 1001 CCATTAAGAGGGAGAGAGGAGATGTATGACGGAGACAGCGAAGGGAAAAATGCTTCAGTT 1060
Query 901 AATACAGGGAGAAGGATAGTGCATACCGATGAATTCAAATTCTTGGACAAAGCAGCGTAC 960
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1061 AACACAGGGAGAAGGATAGTGCATACCGATGAATTCAAGTTCTTGGACAAAGCAGCGTAC 1120
Query 961 ATCACAGCGAGAGATCTTGATGACAAGAAACAAGACGCAGTTAATCCGTGGAGGCTCTGT 1020
|||||||| |||||||| |||||||||||||||||| |||| || || ||||||||||||
Sbjct 1121 ATCACAGCTAGAGATCTAGATGACAAGAAACAAGACTCAGTGAACCCATGGAGGCTCTGT 1180
Query 1021 CCGGTGACACAAGTCGAGGAAGTCAAGTGCATTCTTAGACTGATGCCAATTTGGCTCTGC 1080
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1181 CCAGTGACACAAGTCGAGGAAGTCAAGTGTATTCTTAGACTGATGCCAATTTGGCTCTGC 1240
Query 1081 ACTATAATCTACTCAGTCGTCTTCACCCAAATGGCCTCTCTATTTGTGGAGCAAGGCGCT 1140
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1241 ACTATAATCTACTCAGTCGTCTTCACTCAAATGGCCTCTCTCTTTGTGGAGCAAGGCGCT 1300
Query 1141 GCAATGAATACCTCTGTCTCGGATTTCAAAATCCCCCCTGCAAGTATGTCCAGCTTCGAC 1200
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1301 GCAATGAATACCTCTGTCTCAGATTTCAAAATCCCCCCGGCAAGTATGTCCAGCTTCGAC 1360
Query 1201 ATCCTTAGTGTCGCTTTGTTCATATTCCTATACCGCAGAGTTCTCGAGCCAGTAGCCAAC 1260
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1361 ATCCTTAGCGTCGCTTTGTTCATATTCCTGTACCGCAGAGTTCTCGAGCCAGTAGCCAAC 1420
Query 1261 AGATTCAAGAAGAACGGATCAAAAGGAATCACCGAGCTTCACAGGATGGGAATCGGACTT 1320
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1421 AGATTCAAAAAGAATGGATCAAAAGGAATCACCGAGCTTCACAGGATGGGAATCGGACTT 1480
Query 1321 GTTATTGCTGTCATAGCTATGATTGCAGCCGGAATTGTGGAATGCTATAGGCTAAAGTAC 1380
|| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1481 GTGATTGCTGTCATAGCTATGATTGCAGCCGGGATTGTGGAATGCTATAGGCTTAAGTAT 1540
Query 1381 GCAGACAAAAGTTGCACTCACTGTGATGGCTCAAGCTCCTTAAGCATCTTCTGGCAGGCT 1440
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1541 GCAGACAAGAGTTGTACTCACTGTGATGGCTCAAGCTCCTTAAGCATCTTCTGGCAGGCT 1600
Query 1441 CCACAATACTCACTAATTGGGGCATCAGAAGTGTTCATGTACGTGGGTCAGCTTGAGTTC 1500
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1601 CCACAATACTCACTCATCGGGGCATCAGAAGTGTTCATGTACGTGGGTCAGCTTGAGTTC 1660
Query 1501 TTCAACGCGCAAACACCAGACGGACTAAAGAGCTTCGGGAGCGCTCTGTGTATGATGTCA 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1661 TTCAACGCGCAAACACCAGACGGACTAAAGAGCTTCGGGAGCGCTCTGTGTATGATGTCA 1720
Query 1561 ATGTCAATGGGAAACTTTGTGAGTAGCTTGTTGGTGACAATGGTGGTGAAGATCTCTACA 1620
||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct 1721 ATGTCAATGGGGAACTTTGTTAGTAGCTTGTTGGTAACAATGGTGGTGAAGATCTCAACA 1780
Query 1621 GAGGATCACATGCCTGGTTGGATTCCAAGGAACCTCAACAAAGGTCACTTAGACAGATTC 1680
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1781 GAGGATCACATGCCTGGTTGGATTCCAAGGAATCTCAACAAAGGTCACTTAGACAGATTC 1840
Query 1681 TATTTCCTCTTGGCTGCGTTGACCG-GCATTGACCTGGTGGTATATATTGCCTGTGCAAA 1739
||||||||| ||||||||||||| | ||||||||||||||||||| ||||| ||||||||
Sbjct 1841 TATTTCCTCCTGGCTGCGTTGAC-GAGCATTGACCTGGTGGTATACATTGCATGTGCAAA 1899
Query 1740 GTGGTACAAACCTATAAAACTAGAAGGAAAAGATGAGATGCAAGACATGAGTGATGATGA 1799
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1900 ATGGTACAAACCTATACAACTAGAAGGAAAAGATGAGATGCAAGACATGAGTGATGATGA 1959
Query 1800 CGATGACACCGAGAGCGAAGAGGAACGAGAGAAGGATTCTAAAGTCTAA 1848
| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1960 CTATGACACCGAGAGTGAAGAGGAACGAGAGAAGGATTCTAAAGTCTAA 2008
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91465392990
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5