BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313821
Length=846
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32510.1 | Symbols: ANAC011, NAC011 | NAC domain containing ... 1175 0.0
> AT1G32510.1 | Symbols: ANAC011, NAC011 | NAC domain containing
protein 11 | chr1:11757000-11758118 FORWARD LENGTH=852
Length=852
Score = 1175 bits (636), Expect = 0.0
Identities = 787/858 (92%), Gaps = 18/858 (2%)
Strand=Plus/Plus
Query 1 ATGGTGGGATCCTATTTACCACCTGGTTTCAGATTTCATCCAACAGATGAAGAACTTGTT 60
||||| ||||| | |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 ATGGTAGGATCATTTTTACCACCTGGTTTCAGATTTTATCCAACAGATGAAGAACTTGTA 60
Query 61 GGTTATTACCTGCACAGAAGAAACGAAGGTCTTCAGATCGAGCTCGAAATCATTCCATTA 120
||||||||||||||||||||||||||||| ||| |||||||||||||||| || ||||||
Sbjct 61 GGTTATTACCTGCACAGAAGAAACGAAGGGCTTGAGATCGAGCTCGAAATAATCCCATTA 120
Query 121 ATGGATTTATACAAGTTTGATCCTTGGGAACTTCCAGAGAAATCCTTCTTGCCGGATCGA 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 ATGGACTTATACAAGTTTGATCCTTGGGAACTTCCAGAGAAATCCTTCTTGCCAAATCGA 180
Query 181 GATATGGAATGGTTTTTCTTCTGTCATCGTGACAGAAAATACCAGAACGGATCTCGGATA 240
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 181 GATATGGAATGGTTTTTCTTCTGTCATCGCGACAGAAAATACCAGAACGGATCTCGAATA 240
Query 241 AATAGAGCAACTAAATCTGGATACTGGAAAGCCACGGGCAAAGATCGAAAAATCGTCTGT 300
|| ||||||||||||||||| || ||||||||||| |||||||||||||||||||| ||
Sbjct 241 AACAGAGCAACTAAATCTGGTTATTGGAAAGCCACTGGCAAAGATCGAAAAATCGTTTGC 300
Query 301 CA--C-tcttcttcttc-t--tcttcCTCTGTCACCGGGTGCCGAAAAACCCTAGTTTTT 354
|| | ||||||||||| | ||||||||| ||||||| |||||||||||||||||||||
Sbjct 301 CACTCTTCTTCTTCTTCATCATCTTCCTCTATCACCGGCTGCCGAAAAACCCTAGTTTTT 360
Query 355 TATATGGGTCGAGCCCCTTTTGGTGGTAGAACCGAGTGGGTAATGCATGAGTATCGCCTC 414
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TATATGGGTCGAGCTCCTTTTGGTGGTAGAACCGAGTGGGTAATGCATGAGTATCGCCTC 420
Query 415 TTCGACAACGATACTTCACAAGGATCACTAAACTTTAAGGGAGACTTCGCGCTGTGTCGT 474
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 421 TTCGACAACGATACTTCACAAGGATCACTAAACTTCAAGGGAGACTTCGCGCTGTGTCGT 480
Query 475 GTGATAAAGAGGAATGAGCATACGCGTAAGAAATCTGAAACCAACTCACCAGAGGTTTCA 534
||||||||||||||||||||||||| |||||||| ||||| | ||||||||||||||||
Sbjct 481 GTGATAAAGAGGAATGAGCATACGCTTAAGAAATGTGAAATTATCTCACCAGAGGTTTCA 540
Query 535 GATGAG-CTATTGAGCAACAATGTTAAGATATTTT-GTCAAGCAAGTGACCTAGAAAAGG 592
|||||| | ||| ||||| |||||||| | ||||| ||||||||||||||||||||||||
Sbjct 541 GATGAGTC-ATTAAGCAATAATGTTAACA-ATTTTTGTCAAGCAAGTGACCTAGAAAAGG 598
Query 593 GTTCTTGTGATGCAAGTAACACAC-TCTGGTCTTCACCTGATTTCATCCTTGAATCATTT 651
|||||||||||||||||||||||| | || ||||| |||||||||||||||||||||| |
Sbjct 599 GTTCTTGTGATGCAAGTAACACACGTTTG-TCTTCTCCTGATTTCATCCTTGAATCATCT 657
Query 652 TTTCAGGGAAACTCACAATCACAAACAGAAGAAGATTCTGGTT-CACAAGTATTTCCACT 710
||||||||||| ||||| ||| |||||||||||||||| |||| | ||||||||| || |
Sbjct 658 TTTCAGGGAAATTCACATTCAAAAACAGAAGAAGATTCCGGTTTC-CAAGTATTTACA-T 715
Query 711 T-CCTGAACTCGAAAATCCGCCAGAGGTTTTCGCAGATTTGAATTTCGACTGGGAAATGG 769
| || ||| ||||| |||||| ||||||||| ||||||||||||||||| | ||||||||
Sbjct 716 TACCCGAATTCGAATATCCGCTAGAGGTTTTTGCAGATTTGAATTTCGATTTGGAAATGG 775
Query 770 ATAATCCATTCATGTTTGATTATCATCCAGAAGC-TCATATGAACAATGAAGTCATGAGC 828
| ||||||||||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct 776 AGGATCCATTCATGTTCGATTATCATCCAGA-GCCTCATATGAACAATGAAGTCATGAGC 834
Query 829 TATCACATTCTTGGCTAA 846
||||||||| ||| |||
Sbjct 835 CATCACATTCGTGGGTAA 852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41242234687
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5