BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg313838

Length=246
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G32763.1 | Symbols:  | Cysteine-rich protein | chr1:11860486...   355    1e-97
  AT3G04540.1 | Symbols:  | Cysteine-rich protein | chr3:1223251-...   283    5e-76


> AT1G32763.1 | Symbols:  | Cysteine-rich protein | chr1:11860486-11860891 
REVERSE LENGTH=246
Length=246

 Score =  355 bits (192),  Expect = 1e-97
 Identities = 228/246 (93%), Gaps = 0/246 (0%)
 Strand=Plus/Plus

Query  1    ATGGGCATCACAAAGAATTTAGTGACTTTTTTATTCTTAATAATATTGGCTGCTCTTGTG  60
            ||||| || ||||||| || ||||||||||||||||||| |||||||||||||| |||| 
Sbjct  1    ATGGGTATTACAAAGACTTCAGTGACTTTTTTATTCTTATTAATATTGGCTGCTTTTGTA  60

Query  61   TCCAATTACAATGTATTGGCTTCAGAGATCAAACCTACAGGGAGAATTCATGATCAATGC  120
            ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  61   TCCAATTACAACGTATTGGCTTCAGAGATCAAACCTACAGGGAGAATTGATGATCAATGC  120

Query  121  AAGCAGATGTGTTCGGCAACGTACGGGAATGGTAAATGTTCCGCGGACTGTAGGAAGGCT  180
            ||||||||||||||||||||||||||| | ||||||||| || |||||||||||||||||
Sbjct  121  AAGCAGATGTGTTCGGCAACGTACGGGGACGGTAAATGTGCCTCGGACTGTAGGAAGGCT  180

Query  181  GGGTTCTCATCCGGACAATGTCTTACCTCTTCTCCTTTCGGAAATAAATGTTGTTGCACC  240
            || |||||||||||||  ||||| || |||||||||||||||||||||||||||||||||
Sbjct  181  GGTTTCTCATCCGGACGTTGTCTAACTTCTTCTCCTTTCGGAAATAAATGTTGTTGCACC  240

Query  241  AAGTGA  246
            ||||||
Sbjct  241  AAGTGA  246


> AT3G04540.1 | Symbols:  | Cysteine-rich protein | chr3:1223251-1223714 
FORWARD LENGTH=297
Length=297

 Score =  283 bits (153),  Expect = 5e-76
 Identities = 213/242 (88%), Gaps = 4/242 (2%)
 Strand=Plus/Plus

Query  1    ATGGGCATCACAAAGAATTTAGTGACTTTTTTA-TTCTTAATAATATTGGCTGC-TCTTG  58
            |||| ||||||||||| || ||||||| ||||| || ||||||||| ||||||| || | 
Sbjct  55   ATGGCCATCACAAAGACTTCAGTGACTCTTTTACTT-TTAATAATAATGGCTGCTTCGT-  112

Query  59   TGTCCAATTACAATGTATTGGCTTCAGAGATCAAACCTACAGGGAGAATTCATGATCAAT  118
            |||| |||| ||  || |||||||||||||||||||||||||| ||| || || ||||||
Sbjct  113  TGTCTAATTTCAGCGTCTTGGCTTCAGAGATCAAACCTACAGGAAGAGTTGATAATCAAT  172

Query  119  GCAAGCAGATGTGTTCGGCAACGTACGGGAATGGTAAATGTTCCGCGGACTGTAGGAAGG  178
            ||||| ||||||||||||||||||  ||| | ||||||||| |||| |||||||||||||
Sbjct  173  GCAAGGAGATGTGTTCGGCAACGTTTGGGGACGGTAAATGTGCCGCAGACTGTAGGAAGG  232

Query  179  CTGGGTTCTCATCCGGACAATGTCTTACCTCTTCTCCTTTCGGAAATAAATGTTGTTGCA  238
            |||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct  233  CTGGTTTCTCATCCGGACGATGTCTTACTTCTTCTCCTTTCGGAAATAAATGTTGTTGCA  292

Query  239  CC  240
            ||
Sbjct  293  CC  294



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11159440278


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5