BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313839
Length=1092
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32770.1 | Symbols: ANAC012, SND1, NST3, NAC012 | NAC domain... 1504 0.0
AT2G46770.1 | Symbols: NST1, ANAC043 | NAC (No Apical Meristem)... 315 8e-85
AT3G61910.1 | Symbols: NST2, ANAC066, NAC066 | NAC domain prote... 254 2e-66
> AT1G32770.1 | Symbols: ANAC012, SND1, NST3, NAC012 | NAC domain
containing protein 12 | chr1:11865343-11866950 REVERSE LENGTH=1077
Length=1077
Score = 1504 bits (814), Expect = 0.0
Identities = 1008/1098 (92%), Gaps = 27/1098 (2%)
Strand=Plus/Plus
Query 1 ATGGCGGATAATAAGGTAAATCTGTCTATTAATGGACAATCAAAAGTGCCTCCAGGTTTC 60
||||| ||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTGATAATAAGGTCAATCTTTCGATTAATGGACAATCAAAAGTGCCTCCAGGTTTC 60
Query 61 AGATTCCATCCCACCGAAGAAGAACTTCTCCATTACTATCTCCGTAAGAAAGTTAACTCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGATTCCATCCCACCGAAGAAGAACTTCTCCATTACTATCTCCGTAAGAAAGTTAACTCT 120
Query 121 CAGAAGATCGATCTTGATGTCATTCGTGAAATTGATCTCAACAAGCTCGAGCCTTGGGAT 180
|| ||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||
Sbjct 121 CAAAAGATCGATCTTGATGTCATTCGTGAAGTTGATCTAAACAAGCTTGAGCCTTGGGAT 180
Query 181 ATTCAAGAGGAATGTAGAATCGGTTCGACGCCACAAAACGACTGGTACTTCTTCAGCCAC 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 ATTCAAGAGGAATGTAGAATCGGTTCAACGCCACAAAACGACTGGTACTTCTTCAGCCAC 240
Query 241 AAGGACAAGAAGTATCCAACCGGGACCAGGACAAACCGGGCAACAGTCGCTGGATTTTGG 300
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 241 AAGGACAAGAAGTATCCAACCGGGACCAGGACGAACCGGGCAACAGTCGCTGGATTCTGG 300
Query 301 AAAGCTACCGGACGTGACAAGATCATCTGCAGTTGCATCCGGAGGATTGGATTGAGGAAG 360
|||||||||||||||||||| |||||||||||||| ||||||| |||||| ||||||||
Sbjct 301 AAAGCTACCGGACGTGACAAAATCATCTGCAGTTGTGTCCGGAGAATTGGACTGAGGAAG 360
Query 361 ACACTCGTATTCTACAAAGGAAGAGCTCCTCACGGTCAGAAATCCGATTGGATCATGCAT 420
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 ACACTCGTGTTCTACAAAGGAAGAGCTCCTCACGGTCAGAAATCCGACTGGATCATGCAT 420
Query 421 GAATATCGCCTCGACGATACTCCAATGTCGAATGGCTATTCTGATGTTGTAACCGAAGAT 480
|| |||||||||||||||||||||||||| ||||||||| |||||||||| || ||||||
Sbjct 421 GAGTATCGCCTCGACGATACTCCAATGTCTAATGGCTATGCTGATGTTGTTACAGAAGAT 480
Query 481 CCAATGAACTACAACGAAGAAGGTTGGGTGGTATGTCGAGTGTTCAGGAAGAAGAACTAT 540
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CCAATGAGCTATAACGAAGAAGGTTGGGTGGTATGTCGAGTGTTCAGGAAGAAGAACTAT 540
Query 541 CAAAAGATCGACGATTGTCCTAAAATCACTCTATCTTCTTCAATTGATGACACGGAGGAA 600
|||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 541 CAAAAGATTGACGATTGTCCTAAAATCACTCTATCTTCTTTACCTGATGACACGGAGGAA 600
Query 601 GAGAAGAGGCCCACCTGTCACAACACTCAAAACAGC-ACCGTTTTAGATCATGTTCTTCT 659
|||||| ||||||||| |||||||||||||||| | |||| |||||| |||||||||||
Sbjct 601 GAGAAGGGGCCCACCTTTCACAACACTCAAAAC-GTTACCGGTTTAGACCATGTTCTTCT 659
Query 660 CTACATGGACCGTACCGGTTCTAACATTTGCATGCCCGAGAGGCAAACAACGACCAAAAC 719
|||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 660 CTACATGGACCGTACCGGTTCTAACATTTGCATGCCCGAGAGCCAAACAACGAC------ 713
Query 720 TCAACATCAAGACGATGTCTTATTCACGCAACTTCCAAGTCTTGAGACACCCAAATCTGA 779
|||||||||||| ||||||||||||| |||||| ||||||||||||||||| ||||| ||
Sbjct 714 TCAACATCAAGATGATGTCTTATTCATGCAACTCCCAAGTCTTGAGACACCTAAATCCGA 773
Query 780 GAGCCCGGTCGAC-AATAGTTTCATGACTTCAAACCAACTTGGTT-CTTCTCCGGTTCAA 837
||||||||||||| || |||||| ||||| ||| | |||| | || || |||| ||||||
Sbjct 774 GAGCCCGGTCGACCAA-AGTTTCCTGACTCCAAGCAAACTCGATTTCT-CTCCCGTTCAA 831
Query 838 GAGAAAATTATAACCGGCAGACCTGTTTGCAGTAATTGGGCTAGTCTTGACCGGCTTGTG 897
||||| || | | ||| ||||| |||||||| || |||||||||||||||||||| ||
Sbjct 832 GAGAAGAT-A-A-CCGAAAGACCGGTTTGCAGCAACTGGGCTAGTCTTGACCGGCTCGTA 888
Query 898 GCTTGGCAATTGAACAATGGTCGTCACA--C-GTGTGATCGTAAGAGTTTTGATGAAGAA 954
|||||||||||||||||||||| ||| | | |||| |||||||||||||||||||||||
Sbjct 889 GCTTGGCAATTGAACAATGGTCATCATAATCCGTGTCATCGTAAGAGTTTTGATGAAGAA 948
Query 955 GAAGAAATTGGTGATACTATGATGCAGCGATGGGATCTTCATTGGAATAATGATGATAAT 1014
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 GAAGAAAATGGTGATACTATGATGCAGCGATGGGATCTTCATTGGAATAATGATGATAAT 1008
Query 1015 GTCGATCTCTGGAGTAGTTTCACAGAGTCTTCTTCGTCTCCTTCGTCTTTAGACCCTCTT 1074
|| ||||| |||||||||||||| ||||||||||||||| || |||||| |||
Sbjct 1009 GTTGATCTTTGGAGTAGTTTCACTGAGTCTTCTTCGTCT--TT-------AGACCCACTT 1059
Query 1075 CTTCATTTATCTGTATGA 1092
||||||||||||||||||
Sbjct 1060 CTTCATTTATCTGTATGA 1077
> AT2G46770.1 | Symbols: NST1, ANAC043 | NAC (No Apical Meristem)
domain transcriptional regulator superfamily protein | chr2:19220727-19222916
REVERSE LENGTH=1382
Length=1382
Score = 315 bits (170), Expect = 8e-85
Identities = 336/413 (81%), Gaps = 24/413 (6%)
Strand=Plus/Plus
Query 34 GGACAATCAAAAGTGCCTCC-AGGTTTCAGATTCCATCCCACCGAAGAAGAACT-TCTCC 91
|||||||| |||||||||| ||||| || || ||||| ||||| ||||| || | | |
Sbjct 128 GGACAATCTCAAGTGCCTCCTGGGTTT-AGGTTTCATCCGACCGAGGAAGAGCTGT-TGC 185
Query 92 ATTACTATCTCCGTAAGAAAGTTAACT--C-TCAGAAGATCGATCTTGATGTCATTCGTG 148
| || |||||||| ||||||||||| | | || | |||||||||||||||||||||| |
Sbjct 186 AGTATTATCTCCGGAAGAAAGTTAA-TAGCATC-G-AGATCGATCTTGATGTCATTCGCG 242
Query 149 AAATTGATCTCAACAAGCTCGAGCCTTGGGATATTCAAGAGGAA-TGTAGAATCGGTTCG 207
| |||||||||||||||||||||||||||| ||||||||| | |||| ||| || |
Sbjct 243 ACGTTGATCTCAACAAGCTCGAGCCTTGGGACATTCAAGAG-ATGTGTAAAATAGGAACA 301
Query 208 ACGCCACAAAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTATCCAACCGGGACC 267
|||||||||||||||||||| ||||| |||||||||||||| || ||||| || |||| |
Sbjct 302 ACGCCACAAAACGACTGGTATTTCTTTAGCCACAAGGACAAAAAATATCCGAC-GGGAAC 360
Query 268 -AGGACAAACCGGGCAACAGTCG-CTGGATTTTGGAAAGCTACCGGACGTGACAAGATCA 325
|| || ||| | || || | || |||||||||||||||| || || || ||||||||||
Sbjct 361 GAGAACTAACAGAGCCACTG-CGGCTGGATTTTGGAAAGCAACTGGCCGCGACAAGATCA 419
Query 326 TCTGCAGTTGCA-T--CCGGAGGATTGG-ATTGAGGAAGACACTCGTATTCTACAAAGGA 381
| | | | ||| | ||| || ||||| || ||| ||||| || || |||||||||||
Sbjct 420 TAT--A-TAGCAATGGCCGTAGAATTGGGAT-GAGAAAGACTCTTGTTTTCTACAAAGGC 475
Query 382 AGAGCTCCTCACGGTCAGAAATCCGATTGGATCATGCATGAATATCGCCTCGA 434
||||||||||||| || ||||| ||||||||||||||||||||| | |||||
Sbjct 476 CGAGCTCCTCACGGCCAAAAATCTGATTGGATCATGCATGAATATAGACTCGA 528
> AT3G61910.1 | Symbols: NST2, ANAC066, NAC066 | NAC domain protein
66 | chr3:22929006-22930442 REVERSE LENGTH=1227
Length=1227
Score = 254 bits (137), Expect = 2e-66
Identities = 331/420 (79%), Gaps = 32/420 (8%)
Strand=Plus/Plus
Query 34 GGACAATCAAAAGTGCCTCCAGG-TTTCAGATTCCATCCC-ACCGAAGAAGAACTTC-TC 90
||||| ||| |||| ||||| || ||| || || || ||| ||||| ||||| | || |
Sbjct 54 GGACAGTCACAAGTACCTCCTGGCTTT-AGGTTTCA-CCCAACCGAGGAAGAGC-TCTTG 110
Query 91 CATTACTATCTCCGTAAG-AAA-GT-TAACTCTCAGAAGATCGATCTTGATGTCATTCGT 147
| || || ||||| ||| ||| | |||| || ||||||||||| ||||| |||| |
Sbjct 111 AAGTATTACCTCCGCAAGAAAATCTCTAAC-ATC--AAGATCGATCTCGATGTTATTCCT 167
Query 148 GAAATTGATCTCAACAAGCTCGAGCCTTGGGATATTCAAGAGGAA-TGTA-GAATCGGTT 205
|| ||||||||||||||||||||||||||||||||||||||| | |||| || | ||
Sbjct 168 GACATTGATCTCAACAAGCTCGAGCCTTGGGATATTCAAGAG-ATGTGTAAGATT-GGAA 225
Query 206 CGACGCCACAAAACGACTGGTACTTCT-TCAGCCACAAGGACAAGAAGTATCCAACCGGG 264
||||||| |||||||| |||||||| | | ||||| ||||||||||||||||| ||||||
Sbjct 226 CGACGCCGCAAAACGATTGGTACTTTTAT-AGCCATAAGGACAAGAAGTATCCCACCGGG 284
Query 265 ACCAGGACAAACCGGGCAAC-AGTCGCT-GGATTTTGGAAAGCTACCGGACGTGACAAGA 322
|| || || ||| | || || | || | |||||||||||||| || |||||||||||||
Sbjct 285 ACTAGAACCAACAGAGCCACCA--CGGTCGGATTTTGGAAAGCGACGGGACGTGACAAGA 342
Query 323 TCATCTGCAGTTGCA-TCCG-GAG-GATT-GG-ATTGAGGAAGACACTCGTATTCTACAA 377
||| | | | || | | || || | || || | | ||||| || || ||||||||
Sbjct 343 CCATAT--A-TACCAATG-GTGATAGAATCGGGAT-GCGAAAGACGCTTGTCTTCTACAA 397
Query 378 AGGAAGAGCTCCTCACGGTCAGAAATCCGATTGGATCATGCATGAATATCGCCTCGACGA 437
||| |||| ||||| |||||||||||||||||||||||||| |||||| | ||||||||
Sbjct 398 AGGTCGAGCCCCTCATGGTCAGAAATCCGATTGGATCATGCACGAATATAGACTCGACGA 457
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53513780970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5