BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313855
Length=1059
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33030.1 | Symbols: | O-methyltransferase family protein | ... 1474 0.0
> AT1G33030.1 | Symbols: | O-methyltransferase family protein
| chr1:11964776-11966276 REVERSE LENGTH=1232
Length=1232
Score = 1474 bits (798), Expect = 0.0
Identities = 976/1063 (92%), Gaps = 8/1063 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGAACAAAATCTATCTTTGTACGCAATGATCCTATCTAGCTGTTCTGTTCTTCCC 60
|||||||||||||| || || | ||||||||||||| |||| |||| |||||||||||||
Sbjct 65 ATGGAAGAACAAAACCTCTCCTCGTACGCAATGATCTTATCAAGCTCTTCTGTTCTTCCC 124
Query 61 ATGGTTCTCAAGACAGCTATAGATCTTGGTCTCTTCGACATATTAGCCGAATCTGGTCCT 120
|||||||| |||||||| || |||||||||||||| ||||||||||| ||||||||||||
Sbjct 125 ATGGTTCTTAAGACAGCCATTGATCTTGGTCTCTTTGACATATTAGCTGAATCTGGTCCT 184
Query 121 TCATCTGCCACTCAGATCGTATCTCTCTTGTCTATTCAGAC-ACGAAAACATCATGATTC 179
|| ||||| |||||||| | ||| | ||||||| | |||| | | ||||||||||||||
Sbjct 185 TCCTCTGCTTCTCAGATCTTTTCTTTGTTGTCTAATGAGACAAAG-AAACATCATGATTC 243
Query 180 AAGCTTGGTCAATCGGATTCTTCGGTTTCTTTCGAGTTACTCCATAGTCACCTGCTCTGT 239
||||||||||||||||||||| | |||||| |||||||||| ||| |||| ||||||||
Sbjct 244 AAGCTTGGTCAATCGGATTCTGAGATTTCTTGCGAGTTACTCTATACTCACATGCTCTGT 303
Query 240 TTCCACT-AACCACGATGAGCCATGTGCGGTCTATGGCTTAGCTCCTGTTGCCAAGTACT 298
||| ||| || |||| |||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 304 TTCTACTGAA-CACGGTGAGCCATTTGCAATCTATGGCTTAGCTCCTGTTGCCAAGTACT 362
Query 299 TCACCAAGAACCAAGCTGGAGGTGGCTCGTTGGCTCCGTTGGTGAACT-TGTTTCAGGAC 357
|||||||||||||| ||||||||| |||||||||||| ||||||| | |||||||||||
Sbjct 363 TCACCAAGAACCAAAATGGAGGTGGATCGTTGGCTCCGATGGTGAA-TCTGTTTCAGGAC 421
Query 358 AAAGTCGTAATTGATATGTGGTACAACCTCAAAGATTCTGTTCTTGAAGGAGGAATTCCA 417
|| ||||| | |||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 422 AAGGTCGTGACTGATATGTGGTACAACCTTAAAGATTCTGTTCTTGAAGGAGGGCTTCCA 481
Query 418 TTCAACAAGACACACGGTTCTAGCGCGGTCGAATTGGTTGGAAGAGACTCAAGATTCAGA 477
|||||||| || |||||||| |||||||| ||| |||| || || || ||||||||||||
Sbjct 482 TTCAACAACACTCACGGTTCAAGCGCGGTTGAACTGGTAGGCAGTGATTCAAGATTCAGA 541
Query 478 GAAGTGTTCCAAAGCTCCATGAAAGGTTTCAATGAAGTTTTCATAGAAGAATTTCTGAAG 537
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 542 GAAGTGTTCCAAAGCTCCATGAAAGGTTTCAATGAAGTATTCATAGAAGAATTTCTAAAG 601
Query 538 AATTACAATGGTTTTAATGGTGTGAAGTCGTTGGTTGATGTTGGTGGTGGAGATGGTTCT 597
|| |||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 602 AACTACAATGGTTTTGATGGTGTGAAGTCTTTGGTTGATGTTGGTGGTGGAGATGGCTCT 661
Query 598 CTTCTCAGTAGAATCCTCTCTAAGCATACTCACATCATCAAAGCTATTAACTTTGATTTG 657
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 662 CTTCTCAGTAGAATCATCTCTAAGCATACTCACATTATCAAAGCTATTAACTTTGATTTG 721
Query 658 CCAACTGTTATCAACACGTCACCACCTTCTCCAGGAATTGAGCATGTTGCTGGAGACATG 717
|| |||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||
Sbjct 722 CCCACTGTTATCAACACTTCATTACCTTCTCCAGGAATTGAGCATGTTGCTGGAGATATG 781
Query 718 TTTATAAACATTCCTAAAGGAGAAGTC-ATTTTCATGAAGTGGATGCTCCATAGCTGGGA 776
|||| ||||| |||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 782 TTTACAAACACTCCTAAAGGAGAAG-CTATTTTCATGAAGTGGATGCTCCATAGCTGGGA 840
Query 777 CGATGAACATTGCGTGAAGATACTTTCCAACTGTTATCAATCGTTACCGTCAAATGGGAA 836
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 841 CGATGACCATTGCGTGAAGATACTTTCCAACTGTTATCAGTCGTTACCGTCAAATGGGAA 900
Query 837 GGTGATTGTAGTCGATATGGTAATCCCAGAGTTCCCGGGAGACACTCTCTTAGACAGAAG 896
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 901 GGTGATTGTAGTCGATATGGTAATCCCAGAGTTCCCAGGAGACACTCTCTTAGACAGAAG 960
Query 897 CTTGTTTCAGTTTGAGTTGTTCATGATGAATATGAACCCATCAGGGAAAGAAAGAACAAA 956
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 961 CTTGTTTCAGTTTGAGTTGTTCATGATGAACATGAACCCATCAGGGAAAGAACGAACAAA 1020
Query 957 GAAAGAATTCGAGATCTTATCTCGCCTCGCCGGATTTTCTAATGTCCAAGTTCCATTCAC 1016
||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||
Sbjct 1021 GAAAGAATTCGAGATCTTAGCTCGTCTCGCCGGATTCTCTAATGTCCAAGTTCCATTCAC 1080
Query 1017 ATCTCTCTGTTTCTCAGTTGTAGAGTTCCACAAGAACGAGTGA 1059
||||||||||||||||||| | ||||||||||||||| |||||
Sbjct 1081 ATCTCTCTGTTTCTCAGTTCTTGAGTTCCACAAGAACAAGTGA 1123
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51857162985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5