BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313871
Length=1578
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33260.1 | Symbols: | Protein kinase superfamily protein | ... 1567 0.0
AT1G33265.1 | Symbols: | Transmembrane proteins 14C | chr1:120... 821 0.0
AT4G10390.1 | Symbols: | Protein kinase superfamily protein | ... 706 0.0
> AT1G33260.1 | Symbols: | Protein kinase superfamily protein
| chr1:12064509-12066376 FORWARD LENGTH=1599
Length=1599
Score = 1567 bits (848), Expect = 0.0
Identities = 970/1030 (94%), Gaps = 3/1030 (0%)
Strand=Plus/Plus
Query 1 ATGTCTTGTTTCTTAAGCTGTGTCCGTTTTG--A-TACCACCGACAACAACAAACCCACG 57
||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct 288 ATGTCTTGTTTCTTAAGCTGTGTCCGTTTCGAAACAACCACCGACAACAACAAACCCACG 347
Query 58 ATTACAGAATCTGGTTCTGTCTCCGGTGTTACTTGTTATACTTGGGATGATGTTGAGTCT 117
| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 348 AGTACAGAATCTGGTTCTGTCTCCGGTGTTACCTGTTATACCTGGGATGATGTTGAGTCT 407
Query 118 CTCACTTCCAATTTCTCTAGACTTATTGGTACTGGTGGATACAGTAGTATCTACTTGGCT 177
|||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 408 CTCACTTCCAATTTCTCTAGACTTATTGGTACTGGTGGCTATAGTAGTATCTACTTAGCT 467
Query 178 CGTTTGTCTGGCTCTATCAACGCTGCTCTCAAGGTTCATGTCAGTAGTCATCGTCTTTAT 237
||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 468 CGTGTGTCTGGTTCTATCAACGCAGCTCTCAAGGTTCATGTCAGTAGTCATCGTCTTTAT 527
Query 238 AAAGTGTTTAGGTCTGAGCTTGAGATTTTGCTTCGTCTTCAACATCCTCACATTGTTAAG 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 CAAGTGTTTAGGTCTGAGCTTGAGATTTTGCTTCGTCTTCAACATCCTCACATTGTTAAG 587
Query 298 CTTCTTGGTTACTTTGACGATTCAGAGGAAAGTGGTGCACTATTACTAGAATACCTTCCT 357
|||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct 588 CTTCTTGGTTACTTTGACGATTCAGAAGAAAGTGGAGCACTATTACTAGAGTACCTTCCT 647
Query 358 CAAGGTAACCTTCAAGAGAAGCTTAACCGCAATAGCAAACAAGTGTTACCATGGAGAAAC 417
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 648 CAAGGTAACCTTCAAGAGAAGCTTAACCGGAACAGCAAACAAGTGTTACCATGGAGAAAC 707
Query 418 CGTACCGCTATAGCGTTTCAGGTTGCGCAAGCGATTGAACATATTCATGAGAAATGTAGT 477
| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 708 AGAACCGCTATTGCGTTTCAGGTTGCGCAAGCAATTGAACATATTCATGAGAAATGTAGT 767
Query 478 CCTCAGATTGTGCACGGTGACATCAAATCTTCCAACATACTTCTTGACAAACATTTCAAC 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 CCTCAGATTGTGCACGGTGACATCAAATCTTCCAACATACTTCTTGACAAACATTTCAAC 827
Query 538 TCCAAGCTTTGTGATTTTGGATCAGCTAAGGTCGGGTTCTCGTCTATGGTTCAGCCTTCT 597
||||||||||||||||| ||||||||||| || || ||||||||||||||||||||||||
Sbjct 828 TCCAAGCTTTGTGATTTCGGATCAGCTAAAGTTGGTTTCTCGTCTATGGTTCAGCCTTCT 887
Query 598 AAGACGACGTCAACTATGTCACCACGATCTAAGCAAGTGATGATGATTGGTTCTCCAGGG 657
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 888 AAGACGACGTCAACTATGTCACCACGATCCAAGCAAGTGATGATGATTGGTTCTCCAGGG 947
Query 658 TACACTGATCCTCACTACTTGAGAACAGGTATTGCTTCCAAGAAGATGGATATGTATGGG 717
||||| |||||||| ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 948 TACACAGATCCTCATTACTTGAGAACTGGTATTGCTTCGAAGAAGATGGATATGTATGGG 1007
Query 718 TTTGGAGTGGTGGTTCTTGAGTTGGTTTCGGGTAAAGAAGCGGTTAGCGCTGAGAGAGGC 777
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1008 TTTGGAGTGGTGGTTCTTGAGTTGGTTTCGGGTAAAGAAGCGGTTAGTTCTGAGAGAGGT 1067
Query 778 GAGATGCTGGTACATACATCAGCTCCGTTGATCCACGATATTCTTGATTCGAATGGAGAT 837
|||||| |||| ||| || ||||| ||||||| || || |||||||||||||||||||||
Sbjct 1068 GAGATGTTGGTGCATTCAACAGCTTCGTTGATACATGAGATTCTTGATTCGAATGGAGAT 1127
Query 838 ATCGCAGAAGAGAAAGCGAGACAGTTCTTGGATCCAAGGTTGTCCAGGGACAGTAGTCTT 897
|| | ||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1128 ATTGGAGAAGAGAAAGTGAGACAGTTCTTGGATCCAAGGTTGTCCAGGGATGGTAGTATT 1187
Query 898 GATATAGAAGAGGTTAAGACAATGCTAGGTGTGGCTGCTTTCTGTCTTCGCAGCCCTCCA 957
||| | ||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1188 GATTTGGAAGAGGTTAAGACAATGCTACGTGTGGCTGCTTTCTGTCTTCGTAGCCCTCCA 1247
Query 958 TCGCTGAGACCCTCGGCTTCTCAAGTAGTCCAAACTCTTATCAAGAAGATCCCGTCGCTG 1017
|||||||||||||| |||||||||||||| |||||||||| ||||||||| ||||| ||
Sbjct 1248 TCGCTGAGACCCTCTGCTTCTCAAGTAGTTCAAACTCTTAACAAGAAGATACCGTCTCTA 1307
Query 1018 TCTTTCCTCG 1027
||||||||||
Sbjct 1308 TCTTTCCTCG 1317
> AT1G33265.1 | Symbols: | Transmembrane proteins 14C | chr1:12066595-12068075
FORWARD LENGTH=856
Length=856
Score = 821 bits (444), Expect = 0.0
Identities = 518/554 (94%), Gaps = 4/554 (1%)
Strand=Plus/Plus
Query 1027 GACACACTCGGCGAAGCAATGTCGTCTCTTGCGTTCACGTTAAC-TCTTCCGTCTCTAGT 1085
|||| ||||| ||||||||||| |||||||||| | |||||| | || ||||||| | ||
Sbjct 50 GACAAACTCGACGAAGCAATGTGGTCTCTTGCGCTAACGTTACCATC-TCCGTCTTTGGT 108
Query 1086 GTCGGTGAGGAGCACTAAACTCGGACGAAGTGTCAGTAATGGCGGCCGGAATTGGTCGGG 1145
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 109 GTCGGTGAGGAGCACTAAACTCGGACGAAGTGTTAGTAATGGTGGCCGGAATTGGTCGGG 168
Query 1146 ACTTACGAACTTGTCGGAGAAATCGAAGACCAAACGAGGTAATGGTCTTTGCTGCAAGGC 1205
|||||| || |||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 169 ACTTACTAAGTTGTCGGAGAAATCGAAGACTAAACGAGGTAATGGTCTCTGCTGCAAGGC 228
Query 1206 GGAGCTGTCGGAGCTAGCTCCAGTCGTCTCTGCTACTTATGGTGTTCTTCTTCTAGGAGG 1265
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 229 GGAGCTGTCGGAGCTAGCTCCAGTCGTCTCTGCTACTTATGGTGTACTTCTTCTAGGAGG 288
Query 1266 CGGTCTCTTCGCTTATAGCAAATCTGGAAGCAAAGGTTCTCTCTTTGGGGGTTTGACCGG 1325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 CGGTCTCTTCGCTTATAGCAAATCTGGAAGCAAAGGTTCTCTCTTTGGGGGTTTGACCGG 348
Query 1326 TTCTGTTCTTATGGCATCTGCCTACTATC-TTACTCAATCACCAGAGACCAGGGTTCTCG 1384
|||||||||||||||||||||||||| || ||||| ||||||||||||| || |||||||
Sbjct 349 TTCTGTTCTTATGGCATCTGCCTACT-TCCTTACTAAATCACCAGAGACAAGAGTTCTCG 407
Query 1385 GCGATACCATAGGTCTCGGCGCTGCGTTCCTCTTCTCTTCTGTCTTCGGATTTCGTCTGG 1444
|||||||||||||||| || ||||| |||||||||||||||||||||||||||||| |||
Sbjct 408 GCGATACCATAGGTCTTGGTGCTGCCTTCCTCTTCTCTTCTGTCTTCGGATTTCGTTTGG 467
Query 1445 CATCTTCCCGGAAACCAGTCCCAGCAGGCCCACTACTACTTCTTTCCATCGGCATGTTGT 1504
||||||| ||||||||||| ||||| || ||||||||||| |||||||||||||||||||
Sbjct 468 CATCTTCTCGGAAACCAGTTCCAGCTGGTCCACTACTACTCCTTTCCATCGGCATGTTGT 527
Query 1505 CCTTCTTTGTCATGGCATATATGCACGACAGTTTACCTGTTGTATCCATACCCGATCCAT 1564
|||||||||||||||| |||||||||||||||||||||| | ||||||||||||| || |
Sbjct 528 CCTTCTTTGTCATGGCGTATATGCACGACAGTTTACCTGCTATATCCATACCCGACCCTT 587
Query 1565 TACCTCTACCTTAG 1578
||||||||||||||
Sbjct 588 TACCTCTACCTTAG 601
> AT4G10390.1 | Symbols: | Protein kinase superfamily protein
| chr4:6441673-6443435 REVERSE LENGTH=1579
Length=1579
Score = 706 bits (382), Expect = 0.0
Identities = 780/966 (81%), Gaps = 52/966 (5%)
Strand=Plus/Plus
Query 82 GGTGTTACTTGTTAT-AC--TTGGGATGATGTTGAGTCTCTCACTTCCAATTTCTCTAGA 138
||||| ||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 350 GGTGTGACTTGTTATAACAGCTGGGATGATGTTGAAACTCTCACTTCCAATTTCTCTAGA 409
Query 139 CTT-ATTGGTACTGGTGGATACAGTAGTATCTACTTGGCTCGTTTGTCTGGCTCT-ATCA 196
|| |||||| ||||||| || || ||||||||| ||||||| || ||||||||| || |
Sbjct 410 -TTGATTGGTTCTGGTGGCTATAGCAGTATCTACATGGCTCGCTTCTCTGGCTCTGAT-A 467
Query 197 ACGCTGCTCTCAAGGTTCATGTCAGTAGTCATCGTCTTTATAAAGTGTTTAGGTC-TGAG 255
| || ||||||||||||||||| |||||||| ||||||||| |||| |||| | | ||||
Sbjct 468 AAGCGGCTCTCAAGGTTCATGTTAGTAGTCACCGTCTTTATCAAGTCTTTA-GACTTGAG 526
Query 256 CTTGAGATTTTGCTTCGTCTTCAACATCCTCACATTGTTAAGCTTCTTGGTTACTTT-GA 314
||||| |||||||||||||||||||||||| ||||||| ||||||||||| || ||| ||
Sbjct 527 CTTGATATTTTGCTTCGTCTTCAACATCCTAACATTGTCAAGCTTCTTGGCTA-TTTCGA 585
Query 315 CGATTCAGAGGAAAGTGGTGCAC-TATTACTAGAATACCTTCCTCAAGGTAACCTTCAAG 373
||||||||||||| |||||| | | || || || || ||||||||||| || || ||||
Sbjct 586 TGATTCAGAGGAAAATGGTGCTCTTCTT-CTTGAGTATCTTCCTCAAGGAAATCTACAAG 644
Query 374 AGAAGCT-TAACCGCAATAGCAAACAAGTGTTACCATGGAGAAACCGTACCGCTATAGCG 432
||||||| || |||||||||| ||||| || | |||||| |||||| || || |||
Sbjct 645 AGAAGCTCCAA-AGCAATAGCAAGCAAGTCTTGCAATGGAGGAACCGTGTAGCGATTGCG 703
Query 433 TTTCAGGTT-GCGCAAGCGATTGAACATATTCATGAGAAATGTAGTCCTCAGATTGTGCA 491
|| || ||| | ||||| |||||||||||||||||||||||||| || ||||| |||||
Sbjct 704 TTACA-GTTAGTTCAAGCTATTGAACATATTCATGAGAAATGTAGCCCGCAGATAGTGCA 762
Query 492 CGGTGACATCAAATCTTCCAACATACTTCTTGACAAACA-TTTCAACTCCAAGCTTTGTG 550
||| |||||||||||||||||| | ||||| |||||| | ||| | | ||||||||| |
Sbjct 763 CGGGGACATCAAATCTTCCAACGTTCTTCTAGACAAAAACTTT-GATTGCAAGCTTTGCG 821
Query 551 ATTTTGGATCAGCTAAGGTCGGGTTCTCGTCTATGGTTCAGCCTTCTAAGACGACGTCAA 610
|||| || |||||||| ||||||||||| || |||||||||||| || |||| ||
Sbjct 822 ATTTCGGGTCAGCTAAAGTCGGGTTCTCTTCGATGGTTCAGCCTCCT---ACGATGT--- 875
Query 611 CTATGTCACCACGATCTAAG-CAAGTGATGATGATTGGTTCTCCAGGGTACACTGATCCT 669
| | | | | ||||| || ||||||| |||| | || |||||||| ||||| || |||
Sbjct 876 C---G-C-CTA-GATCT-AGACAAGTGAAGATGGTGGGATCTCCAGGTTACACAGACCCT 928
Query 670 CACTACTTGAGAACAGGTATTGCTTCCAAGAAGATGGATATGTATGGGTTTGGAGTGGTG 729
|| || || ||||| || |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 929 CATTATTTAAGAACCGGGATTGCTTCGAAGAAGATGGATATGTATGGGTTTGGAGTTGTG 988
Query 730 GTTCTTGAGTTGGTTTCGGGTAAAGAAGCGGTTAGC-GCTGAGAGAGGCGAGATGCTGGT 788
||||||||||||||||| || ||||||||| || | ||||||||||| |||||||||||
Sbjct 989 GTTCTTGAGTTGGTTTCAGGAAAAGAAGCGTTTT-CTGCTGAGAGAGGTGAGATGCTGGT 1047
Query 789 ACATACATCAGCTCCG-TTGATCCACGATATTCTTG-ATTCGAATGGAGATATCGCAGAA 846
|||| | | ||||| || || | || ||| ||| |||||| || ||| || ||||
Sbjct 1048 GCATATAGCTGCTCCACTT-ATGAATGAGATT-TTGGATTCGAGTGTAGACATTTCAGAG 1105
Query 847 GAGAAAG-CGAGACAGTTCTTGGATCCAAGGTTGTCCAGGGACAGTAGTCTTGATATAGA 905
|| || | | |||||||||||||| || ||||||| ||||| |||||||||||| ||
Sbjct 1106 GACAAGGTC-AGACAGTTCTTGGACCCGAGGTTGTTAAGGGA---TAGTCTTGATATCGA 1161
Query 906 AGAGGTTAAGACAATGCT-AGGTGTGGCTGCTTTCTGTCTTC-GCAGCCCTCCATCGCTG 963
||||| ||||||||| | || ||| ||||| ||||| | | | ||| | ||| ||
Sbjct 1162 TGAGGTCAAGACAATGTTGAG-TGTTGCTGCGGTCTGTAT-CAGTAGCAAGCTATCTCTA 1219
Query 964 AGACCCTCGGCTTCTCAAGTAGTCCAA-ACTCTTATCAAG-AAGATCCCGTCGCTGTCTT 1021
||||| |||||| ||||||||| | | |||||||| ||| || || || || || ||
Sbjct 1220 AGACCTTCGGCTGCTCAAGTAG-CGGATACTCTTATAAAGGAA-ATACCATCATTGAGTT 1277
Query 1022 TCCTCG 1027
||||||
Sbjct 1278 TCCTCG 1283
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77911245840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5