BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313884
Length=1188
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33430.2 | Symbols: | Galactosyltransferase family protein ... 1779 0.0
> AT1G33430.2 | Symbols: | Galactosyltransferase family protein
| chr1:12124237-12126481 REVERSE LENGTH=1541
Length=1541
Score = 1779 bits (963), Expect = 0.0
Identities = 1134/1213 (93%), Gaps = 26/1213 (2%)
Strand=Plus/Plus
Query 1 ATGAGGGCAAAAGCTGCTTCAGGGAAAGCCATAATAGTGCTGTGTCTAGCCAGCTTTCTT 60
|||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 129 ATGAGGGCGAAAGCTGCTTCGGGGAAAGCCATAATAGTGCTTTGTCTAGCCAGCTTTCTT 188
Query 61 GCAGGCTCACTGTTCATGAGTCGAACTTTGAGTCGCTCTTACATACTTGAAGAAGAGGAT 120
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 189 GCAGGCTCACTGTTCATGAGTCGAACTTTGAGTCGCTCTTACATACCTGAAGAAGAAGAT 248
Query 121 CACCATCTCACAAAGCATTTGTCCAAACATTTAGAGATTCAAAAGGACTGCGATGAACAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 CACCATCTCACAAAGCATTTGTCCAAACATTTAGAGATTCAAAAGGACTGCGATGAACAT 308
Query 181 AAACGCAAATTGATAGAAAGCAAATCCAGAGACATATTAGGAGAAGTATCGAAAACACAC 240
|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||
Sbjct 309 AAACGCAAATTGATAGAAAGCAAATCCAGAGACATAATAGGAGAAGTATCGAGAACTCAC 368
Query 241 CAAGCAGTAAAATCATTGGAGAGAACAATGTCAACGCTGGAGATGGAGTTAGCAGCAGCA 300
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 369 CAAGCAGTAAAATCATTGGAGAGAACAATGTCAACATTGGAGATGGAGTTAGCAGCAGCA 428
Query 301 CGTATCAGCGACAGAAGCAGCGATTTCTGGAGCGAACGGTCGGCGAAAAACCAGAGTCGT 360
|||| |||||| |||||||| || |||||||||||||||||||||||||||||||| |||
Sbjct 429 CGTACCAGCGATAGAAGCAGTGAGTTCTGGAGCGAACGGTCGGCGAAAAACCAGAGCCGT 488
Query 361 CTGCAGAAAGTGTTTGCAGTAATAGGCATCAACACAGCATTCAGTAGTAAGAAAAGACGA 420
|||||||||||||||||||| |||||||| |||||||||||||| || |||||||||||
Sbjct 489 CTGCAGAAAGTGTTTGCAGTGATAGGCATTAACACAGCATTCAGCAGCAAGAAAAGACGT 548
Query 421 GACTCGGTGAGACAAACATGGATGCCAACAGGCGAAAAGCTAAAGAAAATCGAAAAAGAG 480
||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct 549 GACTCGGTGAGACAAACGTGGATGCCAACAGGAGAAAAGCTAAAGAAAATCGAGAAAGAG 608
Query 481 AAAGGGA----T-T------G-TT-G---------T-A-AGGTTTGTGATAGGACACAGT 516
||||||| | | | || | | | |||||||||||||||||||||
Sbjct 609 AAAGGGATTGTTGTAAGAAAGTTTGGATTTTTATTTGACAGGTTTGTGATAGGACACAGT 668
Query 517 GCAACACCAGGAGGAGTATTAGACAAAGCCATAGATGAAGAAGATTCAGAGCATAAAGAT 576
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 669 GCAACACCAGGAGGAGTATTAGATAAAGCCATAGATGAAGAAGATTCAGAGCATAAAGAT 728
Query 577 TTCTTGAGACTAAAACACATTGAAGGATATCACCAACTCTCAACCAAGACAAGACTCTAC 636
||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct 729 TTCTTAAGACTAAAACACATTGAAGGATATCACCAACTCTCGACAAAGACAAGACTGTAC 788
Query 637 TTCTCAACAGCAACTGCAATGTATGACGCAGAGTTCTACGTGAAAGTGGATGATGATGTT 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 TTCTCAACAGCAACTGCAATGTATGACGCAGAGTTCTACGTGAAAGTGGATGATGATGTT 848
Query 697 CATGTCAATTTGGGAATGCTTGTTACAACACTTGCGAGATATCAATCAAGACCAAGGATT 756
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 CATGTCAATTTAGGTATGCTTGTTACAACACTTGCGAGATATCAATCAAGACCAAGGATT 908
Query 757 TACATTGGTTGCATGAAGTCTGGTCCTGTTCTTTCACAAAAGGGAGTGAAGTATCATGAG 816
|||||||| |||||||||||||||||||||||||||||||| ||||||||||| || |||
Sbjct 909 TACATTGGATGCATGAAGTCTGGTCCTGTTCTTTCACAAAAAGGAGTGAAGTACCACGAG 968
Query 817 CCAGAGTTTTGGAAATTTGGAGAAGAGGGTAACAAGTACTTTAGGCATGCGACTGGACAG 876
|||||||||||||||||||||||||| |||||||| |||||||||||||| || || ||
Sbjct 969 CCAGAGTTTTGGAAATTTGGAGAAGAAGGTAACAAATACTTTAGGCATGCAACAGGTCAA 1028
Query 877 ATTTACGCAATCTCTAAGGACTTAGCTGCATATATCTCCACTAACCAGGGAATACTACAC 936
||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 1029 ATTTACGCAATCTCTAAAGACTTAGCTACATATATCTCCACTAACCAAGGAATACTACAC 1088
Query 937 CGGTATGCGAACGAGGATGTGTCGTTAGGAGCATGGATGTTAGGGTTAGAAGTGGAGCAT 996
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 CGGTACGCGAACGAGGATGTGTCGTTAGGAGCATGGATGTTAGGGTTAGAAGTGGAGCAT 1148
Query 997 GTGGACGAGAGGTCAATGTGTTGTGGAACTCCACCGGATTGTCAATGGAAGGCACAAGCC 1056
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1149 GTGGACGAGAGGTCAATGTGTTGTGGAACTCCACCTGATTGTCAATGGAAAGCACAAGCT 1208
Query 1057 GGGAACGTGTGCGCTGCGTCGTTCGATTGGTCTTGCAGCGGGATTTGTAAGTCTGTTGAT 1116
|| ||||| || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1209 GGTAACGTATGTGCTGCGTCGTTCGATTGGTCTTGCAGCGGGATTTGTAAGTCCGTTGAC 1268
Query 1117 CGGATGAGC-CGTGTACATCGAGCTTGTGCTGAAGGAGACACTCCTCTAGCTAATTTTCG 1175
|||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1269 CGGATG-GCTCGTGTGCATCGAGCTTGTGCTGAAGGAGACACTCCTCTAGCTAATTTTCG 1327
Query 1176 CTTCTTCGTCTGA 1188
|||||||||||||
Sbjct 1328 CTTCTTCGTCTGA 1340
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58333033290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5