BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313906
Length=555
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33820.1 | Symbols: | unknown protein; Has 46 Blast hits to... 832 0.0
> AT1G33820.1 | Symbols: | unknown protein; Has 46 Blast hits
to 44 proteins in 25 species: Archae - 0; Bacteria - 8; Metazoa
- 18; Fungi - 1; Plants - 6; Viruses - 0; Other Eukaryotes
- 13 (source: NCBI BLink). | chr1:12278438-12279451 REVERSE
LENGTH=549
Length=549
Score = 832 bits (450), Expect = 0.0
Identities = 522/556 (94%), Gaps = 8/556 (1%)
Strand=Plus/Plus
Query 1 ATGATGAAGCAGAAATTACGAGTGGATCATGATCAAACCATGAACACGAAGATACAACCG 60
|||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||
Sbjct 1 ATGATGAAGCAGAAATTACGAGTGGATCATGATCAAACCATGAACATGATGATTCAACCG 60
Query 61 AATATGTTAAAACAAAGTACAACAACACATGAAAGAGAGATGAGTCATATCGAAGACACA 120
| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 61 ATTATGTTAAAACAAAGTACAACGACACATGAAAGAGAGATGACTCATATCGAAGACACA 120
Query 121 CAAACCATGAACATGATGCTGGAGAATGCGTTAAAACAAAGTGCTATGGCACATGAAAGG 180
||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 121 CAAACCATGAAAATGATGGTGGAGAATGCTTTAAAACAAAGTGCTATGGCACATGAAAGA 180
Query 181 GAGATGAGTCAGCTTAAAGACACACTCCTATTGAAAGACACACAAACCATGAACATGGTG 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAGATGAGCCAGCTTAAAGACACACTCCTATTGAAAGACACACAAACCATGAACATGGTG 240
Query 241 AAACAAATGATGGAGACTGCATTAAAACAGAGTGCAATGGTACATGAAAGAGACATGTGT 300
||||||||||||||||||||||| ||| ||| ||| ||||||||||||||||||||||||
Sbjct 241 AAACAAATGATGGAGACTGCATTCAAAGAGAATGCGATGGTACATGAAAGAGACATGTGT 300
Query 301 CAACTAAAAGACACACTCCAACTGAAAGACACACAAACCATCAACATGATGACGCAAATG 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 CAACTAAAAGACACACTCCAGCTGAAAGACACACAAACCATCAACATGATGACGCAAATG 360
Query 361 AATGCGGAGACATATGAACGAGAGATGCGTCAA-TCGAAAGACATAATTCAACAGAAAGA 419
| ||| || |||||||||||| ||||||||||| | ||||||||| ||||||||||||||
Sbjct 361 AGTGCAGAAACATATGAACGACAGATGCGTCAAAT-GAAAGACATTATTCAACAGAAAGA 419
Query 420 TAGATTAACCATGGAAATGATGGAAAAAATGATGGAAAATGCATTAAAACAGAGTGAGAT 479
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 420 CAGACTAACCATGGAAATGATGGAAAAAATGATGGAAAATGCATTAAAACAGAGTGAAAT 479
Query 480 AGCACATGAAAGAGGAATGCATCATCAATCCCCCCGAAAGGGAAAGGGTACGACATGTGA 539
|||||||||||||||||||||||||||||||||||||||||| ||| || | ||||
Sbjct 480 AGCACATGAAAGAGGAATGCATCATCAATCCCCCCGAAAGGGTAAG---AC-A--TGTGG 533
Query 540 ATGCAACATTATGTGA 555
||||||||||||||||
Sbjct 534 ATGCAACATTATGTGA 549
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26624097910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5