BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313907
Length=768
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33870.1 | Symbols: | P-loop containing nucleoside triphosp... 1105 0.0
AT1G33830.1 | Symbols: | P-loop containing nucleoside triphosp... 278 7e-74
AT2G26820.1 | Symbols: ATPP2-A3, PP2-A3 | phloem protein 2-A3 |... 246 2e-64
AT1G33910.1 | Symbols: | P-loop containing nucleoside triphosp... 152 4e-36
AT1G33930.1 | Symbols: | P-loop containing nucleoside triphosp... 135 5e-31
> AT1G33870.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:12301325-12302467
REVERSE LENGTH=759
Length=759
Score = 1105 bits (598), Expect = 0.0
Identities = 712/766 (93%), Gaps = 12/766 (2%)
Strand=Plus/Plus
Query 1 ATGTTCGCTTCGGAACTACAAGCAGGAGGTGTTACCATGGAATGTAAGATGTTTAGAGCT 60
|||||| |||||||||||||||||||||||||||||||||||||| ||||| |||| ||
Sbjct 1 ATGTTCACTTCGGAACTACAAGCAGGAGGTGTTACCATGGAATGTGTGATGTATAGAACT 60
Query 61 GCAATACAAGATGGTCCAATAATCAATGTGATTGACACTCCTGGTCTCTTTGATTCATCA 120
|||||| |||||||||| ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 61 GCAATAAAAGATGGTCCGATAATCAATGTGATTGACACTCCCGGTCTCTTTGATTCGTCG 120
Query 121 GTGTCTGCTAACTATATTAGTAGGGAGA-TCGTCAATTGCTTAACTATGGCAGAAGGAGG 179
||||||||||||||||||| || ||||| || |||| |||||||||||||||||||||||
Sbjct 121 GTGTCTGCTAACTATATTACTACGGAGATTC-TCAAATGCTTAACTATGGCAGAAGGAGG 179
Query 180 AATTCATGCCTTCCTGTTCGTTTTATCTGCCGGGAATCGGATTACACAAGAAGAAGAGTC 239
||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 180 AATTCATGCCTTCATGTTTGTTTTATCTGCCGGGAATCGGATTACACAGGAAGAAGAGTC 239
Query 240 CACACTTGATACCTTGCAGTTGATTTTCGACAGTAAAATTCTTGACTATATTATTGTTGT 299
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||
Sbjct 240 CACACTTGATACCTTGCAGTTGATTTTCGATAGTAAAATTCTTGACTATTTTATTGTCGT 299
Query 300 GTTCACTGGGGGTGACAAACTAGAAGCAAACGAGCTGAAATTGGACGATTA-TTTTCGTG 358
||||||||||||||||||| ||||||||||||||| || |||||||||||| ||||| ||
Sbjct 300 GTTCACTGGGGGTGACAAATTAGAAGCAAACGAGCAGACATTGGACGATTATTTTTC-TG 358
Query 359 AAGGTTGT-CCAGGGTTTTTAACAAGAGTTCTTCGACTGTGTGGTGGTCGAAAAGTCTTG 417
|||||||| ||| ||||||||| |||||||| ||||||||||||||||||| ||| ||
Sbjct 359 AAGGTTGTCCCA-AATTTTTAACAGGAGTTCTTAGACTGTGTGGTGGTCGAAAGGTCGTG 417
Query 418 TTTAATAACATGACTAAGGATATAGTCAAGAACGCTAAGCAAGTCAAGCAACTTCTGGCC 477
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 418 TTTAATAACATGACTAAGGATAAAGTCAAGAACGCTAAGCAAGTCAAGCAACTTTTGGCT 477
Query 478 CATGTCGAAGCTATAGGAAAGAATAATGGTGGGAAACCGTATACTAACCAGATGCATAGC 537
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
Sbjct 478 CATGTCGAAGCTATTGAAAAGAATAATGGTGGGAAACCGTATACTAACCAGATGCATCGT 537
Query 538 ATGATAAAGGAAAAGGGTGATAAGTTTAGGGAACAACAAAGGAAAGTTAAGTCT-AAAAA 596
|||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||
Sbjct 538 ATGATAAAGGAAAAGGGTGATAAGCTTAGGGAACAACAAAGGAAGGTTAAGTCTAAAAAA 597
Query 597 CTTTGCAGCAGAAATAGAAGTGATGAAGC-GTGATTTAGAATTGGAGCATGACGAAAAAA 655
| ||||| ||||||||||||| ||||||| | ||||||||| ||||||||||||||||||
Sbjct 598 C-TTGCATCAGAAATAGAAGTCATGAAGCAG-GATTTAGAACTGGAGCATGACGAAAAAA 655
Query 656 TGAGACGGATGACACAACTTTTGGAGAGGAGGCTTAAACAGAATTCTGAAGCACATGAAA 715
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 656 TGAGACGGATGACACAACTTTTGGAGAGGAGGCTTAAGCAGAATTCTGAAGCACATGAAA 715
Query 716 GAGCGATGCGTAAGATGAGAGAAGCTATGAGAGAATTCACAAATAA 761
||||||||||| |||||||||||||||||||| |||| ||||||||
Sbjct 716 GAGCGATGCGTGAGATGAGAGAAGCTATGAGA-AATT-ACAAATAA 759
> AT1G33830.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:12279947-12281406
REVERSE LENGTH=678
Length=678
Score = 278 bits (150), Expect = 7e-74
Identities = 381/491 (78%), Gaps = 22/491 (4%)
Strand=Plus/Plus
Query 42 ATGTAAGATGTTTAGAGCTGCAATACAAGATGGTCCAATAATCAATGTGATTGACACTCC 101
|||||||||||| |||||| |||| ||||||| ||||||||||||||||||||||||||
Sbjct 138 ATGTAAGATGTTCAGAGCTTTAATAGAAGATGGCCCAATAATCAATGTGATTGACACTCC 197
Query 102 TGGTCT-CTTTGATTCATCAGTGTCTGCTA-ACTATATTAGTAGGGAGATCGTCAATTGC 159
|||| | || || ||||| ||||| | | ||||| | |||| ||| || | ||||||
Sbjct 198 TGGTTTGCTC-GAGTCATCCGTGTCAGG-AGACTATCTCAGTAAGGAAATAATGAATTGC 255
Query 160 TTAACTATGGCAGAAGGAGGAATTCATGCCT-TCCTGTTCGTTTTATCTGCCGGGAATCG 218
||||||||||| |||| |||||| ||||| | | |||| ||| | ||| ||||||
Sbjct 256 TTAACTATGGCGGAAGAAGGAATACATGC-TGTATTGTTTGTTCTGTCTATAACGAATCG 314
Query 219 GATTACACAAGAAGAAG-AGTCCACACTTGATACCTTGCAGTTGAT-TTTCGAC-AGTAA 275
||| |||| | | || ||| |||| || |||| |||||| ||| ||| || | |||
Sbjct 315 AATTTCACA-GCGGGAGGAGTTCACATTTAATACATTGCAGCAGATATTT-GATGA-TAA 371
Query 276 AATTCTTGACTATATT-ATTGTTGTGTTCACTGGGGGTGACAAACTAGAAGCAAACGAGC 334
||| ||||||||| || ||||| ||||||||||| ||||| | | |||||| || | |
Sbjct 372 AATCCTTGACTAT-TTCATTGTGGTGTTCACTGGTGGTGATGAGTTGGAAGCAGACAACC 430
Query 335 TGAAATTGGACGATTATTTTCGTGAAGGTTGTCCAGGGTTTTTAACAAGAGTTCTTCGA- 393
|| |||||||||||||| ||||||||||| || | ||||| || |||||||| | |
Sbjct 431 AGACCTTGGACGATTATTTACGTGAAGGTTGCCCTGAATTTTTGACGAGAGTTCT-CAAA 489
Query 394 CTGTGTGGTGGTCGAAAAGTCTTGTTTAATAACATGACTAAGGATATAGTCAAGAACGC- 452
|| ||||| || ||||| ||| ||||||| |||| ||| ||||||| || ||||| |
Sbjct 490 CTATGTGGAGGACGAAAGGTCCTGTTTAACAACAAGACAAAGGATAAAGGCAAGAG-GAA 548
Query 453 TAAGCAAGTCAAGCAACTTCTGGCCCATGTCGAAGC-TATAGGAAAG-AATAATGGTGGG 510
||||||| | || || ||||| || |||||| | | |||| || || || |||||||||
Sbjct 549 TAAGCAACTTAACCAGCTTCTAGCACATGTC-ACGGATATAAGACAGCAA-AATGGTGGG 606
Query 511 AAACCGTATAC 521
| |||||||||
Sbjct 607 ATACCGTATAC 617
> AT2G26820.1 | Symbols: ATPP2-A3, PP2-A3 | phloem protein 2-A3
| chr2:11437808-11442199 FORWARD LENGTH=1392
Length=1392
Score = 246 bits (133), Expect = 2e-64
Identities = 412/542 (76%), Gaps = 38/542 (7%)
Strand=Plus/Plus
Query 27 AGGTGTTACCATGGA-ATGT-AAGATGTTTAGAGCTGCAATACAAGATGGTCCAATAATC 84
||| |||||||| || |||| || |||| ||||||||||||||||||||||||||||||
Sbjct 114 AGGCGTTACCAT-GATATGTGAA-ATGTACAGAGCTGCAATACAAGATGGTCCAATAATC 171
Query 85 AATGTGATTGACACTCCTGGTCTCTTTGATTCAT-CAGTGTCTGCTA-ACTATATTAGTA 142
||||| ||||||||||||||| | | || || | | ||| | | | || | || ||||
Sbjct 172 AATGTCATTGACACTCCTGGTTTGTGCGACTCGTTC-GTGCCCGG-AGACGACATAAGTA 229
Query 143 GGGAGATCGTCAATTGCTTAACTATGGCAGAAGGAGGAATTCATGCCT-TCCTG-TTCGT 200
|| || ||||||||||||| ||||| |||| ||| || ||||| | | || || ||
Sbjct 230 ACGAAATAATCAATTGCTTAACAATGGCGGAAGAAGGTATACATGC-TGTGTTGCTT-GT 287
Query 201 TTTATCTGCC-GGGAATCGGATTACACAAGAAGAAG-AGTCCACACTTGATACCTTGCAG 258
| ||||||| ||| ||| ||| || ||| || || |||| ||| || |||||||||||
Sbjct 288 TCTATCTGCTAGGGG-TCGCATTTCA-AAGGAGGAGGAGTCTACAGTTAATACCTTGCAG 345
Query 259 TTG-ATTTTCGACAGTAAAATTCTTGACTATATT-ATTGTTGTGTTCACTGGGGGTGACA 316
| | || |||| ||| |||||||||||||| | ||||||||||||||||| ||||||
Sbjct 346 T-GCATATTCGGCAGCCAAATTCTTGACTAT-TGCATTGTTGTGTTCACTGGCGGTGACG 403
Query 317 AACTAGAAGCAA-ACGAGCTGAAATTGGACGATTATTTTC-GTGAAGGTTGTCCAGGGTT 374
| | |||| || |||| | || ||| ||||||||||| | | | ||||| || | ||
Sbjct 404 ATTTGGAAG-AAGACGATCAGACATTAGACGATTATTT-CAGAGCTGGTTGCCCTGAATT 461
Query 375 TTTAAC-AAGAGTTCTTC-GACTGTGTGGTGGTCGAAAAGT-CTTGTTTAATAACATGAC 431
|| || || |||||| | |||| |||||||| || || || || ||| |||||| |
Sbjct 462 CTTGACGAA-AGTTCT-CAGACTCTGTGGTGGACGGAAGGTGCTA-TTTGATAACAAAAG 518
Query 432 TAAGGAT-ATA-GTCAAGAACGCTAAGCAAGTCAAGCAACTTCTGGCCCATGTCGAAGCT 489
||| ||| | | | ||||| | | ||||||| ||||| ||||| |||| ||| ||| |
Sbjct 519 TAAAGATGAAAAG--AAGAAGGTTGAGCAAGTTAAGCAGCTTCTAGCCCGTGTGGAAAAT 576
Query 490 ATAGGAAAGAATAA-TGGTGGGAA-ACCGTATACTAACCAGATGCATAGCATGATAAAGG 547
||||| || | || |||||| || |||||||||| | ||| |||| | | ||||||||
Sbjct 577 GTAGGAGAGCA-AACTGGTGG-AATACCGTATACTTATCAGTTGCACCGTAAGATAAAGG 634
Query 548 AA 549
||
Sbjct 635 AA 636
> AT1G33910.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:12314904-12316258
FORWARD LENGTH=906
Length=906
Score = 152 bits (82), Expect = 4e-36
Identities = 367/501 (73%), Gaps = 34/501 (7%)
Strand=Plus/Plus
Query 34 ACCATGGAATGTAAGATGTTTAGAGCTGCAATACA--AGATGGTCCA-ATAATCAATGTG 90
||| |||||||||||| | || |||| || ||| |||||| ||| ||||||||||||
Sbjct 127 ACCGTGGAATGTAAGACATGTAAAGCT--AAGACACTAGATGG-CCAGATAATCAATGTG 183
Query 91 ATTGACACTCCTGGTCTCTTTGATTCATCAGTGTCTGCTAACTATATTAGTAGGGAGATC 150
|||||||||||||||||||| |||| || |||||| | | ||||| | | |||||||
Sbjct 184 ATTGACACTCCTGGTCTCTTCGATTTGTCCGTGTCTACGGATTATATGAACAAGGAGATC 243
Query 151 GTCAATTGC-TTAACTATGGCAGAAGGAGGAATT-CATGCCT-TCCTGTTCGTTTTATCT 207
|||||||| ||| | | | || ||||| || ||||| | | |||| || |||||
Sbjct 244 ATCAATTGCCTTACCC-TCACGGATGGAGGG-TTACATGC-TGTGGTGTTAGTACTATCT 300
Query 208 GCCGGGAATCGG-ATTACACAAGAAGAAGAGTCCACACTTGATACCTTGCAGTTGATTTT 266
| |||| | | ||| | |||| |||||| || ||||| | | || ||| | ||||
Sbjct 301 GTGGGGACT-GACATTTTAAAAGAGGAAGAGGCCGCACTTAACAAGTTACAGCTCCTTTT 359
Query 267 CGACAGTAAAATTCTTGACTATATTATT-GTTGTGTTCACTGGGGGTGACAAACTAGAA- 324
| |||||||||| |||||||| || | ||| | |||||||| ||||| | |||
Sbjct 360 TGGCAGTAAAATTGTTGACTAT-TTGGTCGTTCTCTTCACTGGTGGTGATGTTTTGGAAA 418
Query 325 -GCAAA-CGAG-CTGAAATTGGACGATTATTT-TCGTGAAGGTTGTCCAGGGTTTTT-AA 379
| ||| | || | | ||| |||| ||||| || || || || || | ||||| ||
Sbjct 419 AGGAAAACAAGAC--AC-TTG-ACGACTATTTGTCCAGA-GGCTGCCCTGAATTTTTGAA 473
Query 380 CAAGAGTTCTTCGACTGTGTGGTGGTCGAAAAGTCTTGTTTAATAACATGACTAAGGAT- 438
| ||||||| || ||||||| || ||| || ||||||||||||| ||||| ||||
Sbjct 474 GAC-AGTTCTTAGATTGTGTGGCGGAAGAAGGGTTTTGTTTAATAACAAGACTACGGATG 532
Query 439 ATAGTCAAGAACGCTA-AGCAAGTCAAGCAACTTCTGGCCCATGTCGAAGCTATAGGAAA 497
| ||||||||| | | ||||||| || || || || |||||||||||||| || | |||
Sbjct 533 A-AGTCAAGAA-GATCGAGCAAGTTAAACAGCTCCTTGCCCATGTCGAAGCCATTGAAAA 590
Query 498 GAAT-AATGGTGGGAAACCGT 517
| || ||||||||| |||
Sbjct 591 TC-TCAACGGTGGGAAAGCGT 610
> AT1G33930.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:12323888-12327084
FORWARD LENGTH=1011
Length=1011
Score = 135 bits (73), Expect = 5e-31
Identities = 400/551 (73%), Gaps = 50/551 (9%)
Strand=Plus/Plus
Query 28 GGTGTTACCATGGA-ATGTAAGATGTTTAGAGCTGCAATACAAGATGGTCCAATAATCAA 86
|||||||||| | |||||||| |||||||||| | || ||||| || ||||||||
Sbjct 205 GGTGTTACCA-CAAGATGTAAGACATTTAGAGCTGTGACACCGGATGGCCCCATAATCAA 263
Query 87 TGTGATTGACACTCCTGGTCTCTTTGAT-TCATCAGTGTCTGCTAACTATATTAGTAGGG 145
|||||||||||||||||||||||| || | | ||||| ||| | | |||||||| ||
Sbjct 264 TGTGATTGACACTCCTGGTCTCTTCGACCTGGCC-GTGTCCGCTGAGTTTATTAGTAAGG 322
Query 146 AGATCGTCAATTGC-TTAA-CTATGGC-AGAAGGAGGAATTCATGCCT-TCCTGTTCGTT 201
| |||||||| ||| ||| || || | ||| | ||| | ||||| | | |||| |||
Sbjct 323 AAATCGTCAACTGCCTTATTCT-TG-CTAGA-GAAGGGCTACATGC-TGTGGTGTTAGTT 378
Query 202 TTATC-T-GCCGGGAATCGGATTACACAAGAAGAAGAGTCCACACTT-GATACCTTGCAG 258
|||| | | || | ||||||| ||||||| ||||| | ||||| | ||| || |||
Sbjct 379 CTATCCTTGTCG--ACTCGGATTTCACAAGAGGAAGAAAACGCACTTTG-TACGTTACAG 435
Query 259 TTGATT-TTCGACAGTAAAATTC-TTGACTATATT-ATTGTTGTGTTCACTGGGGGTGAC 315
|| || |||| ||||||| | |||||||| || || ||||| |||||| | |||||
Sbjct 436 ATG-TTGTTCGGGGGTAAAAT-CGTTGACTAT-TTGATCGTTGTATTCACTTGTGGTGAT 492
Query 316 AAACTAGAAGCAAACGAGCT--GAAATTGGACGATTATTT-TCGTGAA-GGTTGTCCAGG 371
| | |||| | ||| | || || || |||||||| || || ||||| || |
Sbjct 493 ATGTTGGAAG-AT-CGAAATATGACTTTAGAAGATTATTTGTCC--AATGGTTGCCCTGA 548
Query 372 GTTTTTAAC-AAGAGTTCTTC-GACTGTGTGGTGGTCGAAAAGTCTTGT-TTA-ATAACA 427
||| ||| || ||||| | |||| ||||| || | | ||| |||| || |||||
Sbjct 549 ATTTCTAAAGAAT-GTTCT-CAGACTATGTGGAGG-C-AGAAGGGTTGTATTTGATAACC 604
Query 428 TGA-CTAAGGAT-ATAG-TCAAGAACGCTAAGCAAGTCAAGCAACTTCTGGCCCATGTCG 484
|| | || ||| | || | ||| |||||||||||| |||| ||||||| ||||||||
Sbjct 605 -GAACGAAAGATGA-AGGTGT-GAAGGCTAAGCAAGTCCAGCAGCTTCTGGTCCATGTCG 661
Query 485 AAGCTATAGGAAAGAATAA-TGGTGGGAAACCGTATACTAAC-CAGATGCATAGCATGAT 542
||| || | |||| | || ||||||||| || | ||| || | |||||| | | |||
Sbjct 662 CAGCGATTGAAAAGGA-AACTGGTGGGAATCCCTTTACGGACAC-GATGCACCGTAGGAT 719
Query 543 AAAGGAAAAGG 553
| ||||| |||
Sbjct 720 ACAGGAAGAGG 730
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37323971221
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5