BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313911
Length=981
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33900.1 | Symbols: | P-loop containing nucleoside triphosp... 1480 0.0
> AT1G33900.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:12311518-12313518
REVERSE LENGTH=981
Length=981
Score = 1480 bits (801), Expect = 0.0
Identities = 927/987 (94%), Gaps = 12/987 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGGACTTGAGGACACGACTGATCTGAGGTTGCCTTCAGCATCAGAGCCAATAAAA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTGGACTTGAGGACACGACTGATCTGAGGTTGCCTTCAGCATCAGAGCCAATAAAG 60
Query 61 AACATAGTTTTGGTGGGGCGTACCGGAAATGGAAAAAGCGCCACTGGAAACTCCCTTATC 120
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 AACATAGTTTTGGTGGGACGTACCGGAAACGGAAAAAGCGCCACTGGAAACTCCCTTATC 120
Query 121 GGAAAACAAGTGTTCAACTCAGAAACACGAGCAACCGGTGTTACCATGAAATGTGAAACA 180
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGAAAACAAGTGTTCAGGTCAGAAACACGAGCAACCGGTGTTACCATGAAATGTGAAACA 180
Query 181 TGTATAGCGAAAACACCATGTGGCACGGGAATCAATGTGATTGACACTCCTGGTCTGTTC 240
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGTGTAGCGGTAACACCATGTGGCACGGGAATCAATGTGATTGACACTCCTGGTCTGTTC 240
Query 241 GATCTGTCTGTGTCCGCTGAATATCTCAGCCAGGAAATCATCAATTGCCTTGTTCTTGCG 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 GATCTGTCTGTGTCCGCTGAATATCTCAGTCAGGAAATCATCAATTGCCTTGTTCTTGCG 300
Query 301 GAAGAAGGACTACATGCTGTGGTGTTAGTCCTATCTGTGAGGACTCGAATTTCGCAAGAG 360
||||| ||||||||||||||||||||||| || || ||||||||||| |||||||||||
Sbjct 301 GAAGATGGACTACATGCTGTGGTGTTAGTTCTGTCGGTGAGGACTCGGATTTCGCAAGAA 360
Query 361 GAAG-AGTCCACGCTTAATACATTACAAGTTATTTTTGGGAGTGAAATCATTGACTATTT 419
|||| || |||| |||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 361 GAAGAAG-CCACACTTAATACCTTACAAGTTATTTTTGGGAGTCAAATCATTGACTATTT 419
Query 420 AGTAGTTTTATTCACTGGTGGTGATGAGTTGGAAGCAAACAATATGACACTGGATGATTA 479
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 420 AGTAGTATTATTCACTGGTGGTGATGAGTTGGAAGCAAACAATATGACATTGGATGATTA 479
Query 480 CTTGTCCAAAGGTTGCCCTGAATTTCTGAAGACAGTTCTTAGGTTGTGTGGGGGCAGAAG 539
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 480 CTTGTCCAAAGGTTGCCCTGAATTTCTGAAGACAGTTCTTAGATTGTGTGGGGGCAGAAG 539
Query 540 GATCCTGTTTGATAACAGGACTACGGATGAAGGCAAAAAGGTCAAGCAAGTTCAGGAACT 599
|||||| |||||||||||||| ||||| |||||||| |||||||| ||||||||||||||
Sbjct 540 GATCCTCTTTGATAACAGGACAACGGACGAAGGCAAGAAGGTCAAACAAGTTCAGGAACT 599
Query 600 TCTCGCCCTTGTAGCGGATATTGAAAAGAGCACTGGTGGGAAACCGTTTACGGATGAAAT 659
|||||||| ||| || | ||||||||||||||| |||||| ||||||||||| |||||
Sbjct 600 TCTCGCCCATGTTGCAGCCATTGAAAAGAGCACTAGTGGGATTCCGTTTACGGACGAAAT 659
Query 660 GCACCGTAAAATACAGAAAGAGGCGGAGATGCTTAAGGAGCAGCAAAAAGAGGTCGAATC 719
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 660 GCACCGTAAAATACAGAAAGAGGCGGAGACGCTTAGGGAGCAGCAAAAAGAGGTCGAATC 719
Query 720 TAAGGACCTTGCAGCTGCAGAGATTGAAAAACT-GAAGAAGCATTATCAAGA-AGAGCAT 777
|||||||||||||||||| |||||||||||| | |||||||||||||||| | |||||||
Sbjct 720 TAAGGACCTTGCAGCTGCCGAGATTGAAAAA-TGGAAGAAGCATTATCAA-ACAGAGCAT 777
Query 778 GACAAAAATATGAACATGATGGCAGAGATGCTAGGGAATAAGCTAAGAGAGGATTCCGAA 837
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 778 GACAAAAATATGAACATGATGGCAGAGATGCTAGGGAATAGGCTAAGAGAGGATTCCGAA 837
Query 838 AGACAGGAGAAAATGTTGCTTGCGCTGAGAGATAACCTTGAGATTTCACAAAGACAAAAC 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AGACAGGAGAAAATGTTGCTTGCGCTGAGAGATAACCTTGAGATTTCACAAAGACAAAAC 897
Query 898 AAATAT-AACGATACT-ATTGACAATGTGCCTGATCACATACATTATGGGTGTT-CACTT 954
|||| | ||||| ||| | ||| |||| |||||||| |||||||| |||| ||| |||||
Sbjct 898 AAAT-TGAACGA-ACTTACTGATAATGAGCCTGATCTCATACATTGTGGG-GTTTCACTT 954
Query 955 CCGCCAATGCCATGCAACATGTTATGA 981
|| |||||||||||||||||||||
Sbjct 955 AGGCGGATGCCATGCAACATGTTATGA 981
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48023844532
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5