BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg313917

Length=564
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G34010.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   767    0.0  


> AT1G34010.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G22790.2); 
Has 74 Blast hits to 74 proteins in 12 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:12359536-12361189 
REVERSE LENGTH=995
Length=995

 Score =  767 bits (415),  Expect = 0.0
 Identities = 523/570 (92%), Gaps = 27/570 (5%)
 Strand=Plus/Plus

Query  1    ATGTTATTTGCAGCAGAAGGAGGAGGATTCTTCTCTTCATCAGCTTCTGGTTATAGCAAT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  162  ATGTTATTTGCAGCAGAAGGAGGAGGATTCTTCTCTTCATCAGCTTCTGGTTATAGCAAT  221

Query  61   GGTTTAGCTCTTCTTCTATTAGGTCAAAAGAATGAACAAAAACCTATCAAAGTATCATCA  120
            ||||||||||||||||||||||||||||||| |||||||||||| |||||||| |  |||
Sbjct  222  GGTTTAGCTCTTCTTCTATTAGGTCAAAAGACTGAACAAAAACCAATCAAAGT-T--TCA  278

Query  121  TCACAATGGAACCATTATCATTTAGTGGTTGAAGAATCTGATACTGGGTTTCGGTTAGAT  180
            ||||||||||||||||||||||||||  ||||||| |||||||| |||||||||||||||
Sbjct  279  TCACAATGGAACCATTATCATTTAGTTCTTGAAGATTCTGATACCGGGTTTCGGTTAGAT  338

Query  181  TCGTCTAAGAATTGGCTCTCTTCTGCCTGCACTTCACTTATATGTTTTGGTCGAAAATCC  240
            |||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct  339  TCGTCTAAGAATTGGCTCTCTTCTGCTTGCACTTCTCTCATATGTTTTGGTCGAAAATCC  398

Query  241  GAAAGACTTGAAAGTCCATCTGATATTCGAGGGAAGAAGGATGAGGCAGTGGCACCGAGT  300
            |||||||| |||||     | |  |   | ||||||||  | || | |  ||||||||||
Sbjct  399  GAAAGACTGGAAAG-----C-G--A---G-GGGAAGAA--A-GATG-A--GGCACCGAGT  440

Query  301  GTGGA-G--TATAAT---TGTGAAGTTACTAATAGGTTTGCACTTAAAAGCAGCTTGAAG  354
            ||||| |  ||||||   |||||||| |||||||||||||||||||||||||||||||||
Sbjct  441  GTGGAGGACTATAATAACTGTGAAGTCACTAATAGGTTTGCACTTAAAAGCAGCTTGAAG  500

Query  355  AAGCGGTCATTTAGCGATGTTGTGATTGGTGATGATGATGTGAGTAGAGATGGTGTGGTG  414
            ||  | || ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  501  AAAAGATCGTTTAGTGATGTTGTGATTGGTGATGATGATGTGAGTAGAGATGGTGTGGTG  560

Query  415  GATCATACAGATAGAAGGAAAGTGCAGTGGCCTGATACTTGTGGTATTGAGATTGCTGAG  474
            ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  561  GATCATATAGATAGAAGGAAAGTGCAGTGGCCTGATACATGTGGTATTGAGATTGCTGAG  620

Query  475  GTCAGAGAATTTGAGCCTAGTGAAGTTGATGAATCAGACGATGAGTTTCATCATGGAAGT  534
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  621  GTCAGAGAATTTGAGCCTAGTGAAGTTGATGAATCAGAAGATGAGTTTCATCATGGAAGT  680

Query  535  GGAAAAAGCTGTATGTGCACAATCATGTGA  564
            ||||||||||||||||||||||||||||||
Sbjct  681  GGAAAAAGCTGTATGTGCACAATCATGTGA  710



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27076205233


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5