BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313922
Length=966
Score E
Sequences producing significant alignments: (Bits) Value
AT1G34065.1 | Symbols: SAMC2 | S-adenosylmethionine carrier 2 |... 1502 0.0
> AT1G34065.1 | Symbols: SAMC2 | S-adenosylmethionine carrier 2
| chr1:12398435-12401036 REVERSE LENGTH=1320
Length=1320
Score = 1502 bits (813), Expect = 0.0
Identities = 915/966 (95%), Gaps = 0/966 (0%)
Strand=Plus/Plus
Query 1 ATGGATAGTGACATTGTTTCCAGTAGCGTTGATCAATCTCGGACAGCAATGCCTGATTCA 60
||||||||||||||||||||||||||| | |||| ||||| |||||||||||||||| |
Sbjct 73 ATGGATAGTGACATTGTTTCCAGTAGCATAGATCGATCTCAGACAGCAATGCCTGATGCT 132
Query 61 TTGGCATTTAAGAGTATCAATGATCCTATCAAGAACAAGATCAATGGTTGTGCTACAATC 120
|| ||||| ||||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 133 TTAGCATTCAAGAGTATCAATGATCCTATCAAGAACCAGATCAATAGTTGTGCTGCAATC 192
Query 121 TGTGTTAAACAAGATGATCCATGCCATTTCTTGCGTGTCCTTTATGAGTCTCTGATAACA 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 TGTGTTAAGCAAGATGATCCATGCCATTTCTTGCGTGTCCTTTATGAGTCTCTGATAACA 252
Query 181 GGAGGGTTGGCTGGTGTTGTGGTGGAAGCTGCTCTATACCCAATTGATACGATCAAAACT 240
|||||||| |||||||||||||||||||||||| | || ||||||||||| |||||||||
Sbjct 253 GGAGGGTTAGCTGGTGTTGTGGTGGAAGCTGCTTTGTATCCAATTGATACAATCAAAACT 312
Query 241 CGAGTACAGGTAGCTCGGGATGGAGGAAAGATAATATGGAAGGGACTATACTCTGGTCTT 300
||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 313 CGAATACAGGTAGCTCGGGATGGTGGAAAGATAATATGGAAGGGATTATACTCTGGTCTT 372
Query 301 GGTGGAAATCTTGTCGGTGTCTTACCTGCGTCGGCTCTATTTTTCGGTGTATATGAACCA 360
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 373 GGTGGAAATCTTGTCGGTGTCTTACCTGCTTCGGCTCTATTTTTTGGTGTATATGAACCA 432
Query 361 ACCAAACAGAAGCTGCTGAAGGTTTTGCCTGAGAATCTTAGTGCGGTTGCACATTTGGCT 420
||||||||||||||||| |||||||| || || |||||||||||||||||||||||||||
Sbjct 433 ACCAAACAGAAGCTGCTAAAGGTTTTACCAGATAATCTTAGTGCGGTTGCACATTTGGCT 492
Query 421 GCAGGTGCTTTAGGAGGTGCTGTTTCATCTATTGTTCGAGTACCTACAGAAGTTGTCAAA 480
|||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 493 GCAGGTGCGTTAGGAGGTGCTGTTTCATCTATTGTTCGGGTACCAACAGAAGTTGTGAAA 552
Query 481 CAGCGGATGCAAACTGGTCAATTTGCTTCGGCCCCTGATGCTGTTCGCCTTATTATAGCC 540
||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 553 CAGCGGATGCAGACTGGTCAATTTGTTTCGGCCCCTGACGCTGTTCGCCTTATTATAGCC 612
Query 541 AAGGAGGGCTTTGGAGGCATGTATGCGGGTTATGGATCTTTCCTGTTGCGAGATTTGCCT 600
|||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||
Sbjct 613 AAGGAGGGCTTTGGAGGCATGTATGCGGGTTATGGATCCTTCTTATTGCGAGATTTGCCT 672
Query 601 TTTGATGCGCTCCAGTTTTGTGTATATGAGCAATTACGGATTGGATACAAGTTGGCTGCG 660
||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 673 TTTGACGCGCTCCAGTTTTGTGTTTATGAGCAATTACGAATTGGATACAAGTTGGCTGCA 732
Query 661 AGAAGAGATCTAAATGATCCAGAGAATGCAATGCTTGGTGCTTTTGCTGGTGCTGTCACT 720
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 733 AGAAGAGATCTAAATGATCCAGAGAATGCGATGATTGGTGCTTTTGCTGGTGCTGTCACT 792
Query 721 GGAGTTTTGACCACTCCTCTAGACGTTATCAAAACCAGATTAATGGTTCAGGGCGCAGGA 780
|||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||
Sbjct 793 GGAGTTTTGACCACTCCTCTTGATGTTATCAAAACCAGATTAATGGTTCAGGGCTCAGGA 852
Query 781 ACTCAGTATAAAGGAGTCTCAGATTGCATTAAGACGATAATAAGAGAAGAAGGGTCATCA 840
||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct 853 ACTCAGTATAAAGGAGTTTCGGATTGCATTAAGACGATAATAAGAGAAGAAGGTTCATCA 912
Query 841 GCTTTGTGGAAGGGAATGGGTCCAAGGGTATTATGGATAGGTATTGGAGGTTCAATTTTC 900
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 913 GCTTTGTGGAAGGGAATGGGTCCAAGGGTATTGTGGATAGGTATTGGAGGTTCAATTTTC 972
Query 901 TTTGGTGTATTGGAAAAGACAAAGCAGATTCTTTCAGAAAGAAGCCAAAAGAGTCACAAT 960
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 973 TTTGGTGTTTTGGAAAAGACAAAGCAGATTCTTTCAGAGAGAAGCCAAAAGAGTCACAAT 1032
Query 961 GCTTAA 966
||||||
Sbjct 1033 GCTTAA 1038
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47270332327
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5