BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313929
Length=1689
Score E
Sequences producing significant alignments: (Bits) Value
AT1G34160.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2261 0.0
> AT1G34160.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:12441393-12443256 FORWARD LENGTH=1777
Length=1777
Score = 2261 bits (1224), Expect = 0.0
Identities = 1486/1611 (92%), Gaps = 24/1611 (1%)
Strand=Plus/Plus
Query 1 ATGGCTCGTGTTTACATGGAGACGATGATACAAAATTGCGTCACCTTCTCCCAAATCAAA 60
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1 ATGGCTCGTGTTTACATGGAGACGATGATACAAAAATGCGTCAGCTTCTCCCAAATCAAA 60
Query 61 CAACTCCAATCTCATTTTCTCACCGCCGGCCATTTCCAATCTTCCTTTCTCCGTTCTCGT 120
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAACTCCAATCTCACTTCCTCACCGCCGGCCATTTCCAATCTTCCTTTCTCCGTTCTCGT 120
Query 121 CTTCTCGAACGCTGCGCAATCTCACCATTCGGCGACCTTTCCTTCGCCGTAAAAATCTTC 180
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||
Sbjct 121 CTTCTCGAACGCTGCGCAATCTCACCATTCGGAGACCTTTCCTTCGCCGTACAAATTTTC 180
Query 181 C-GTCACATCCCTAAACCTTTAACCAATGATTGGAACGCAATCATCCGCGGATTCGCCGG 239
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGGT-ACATCCCTAAACCTTTAACCAATGATTGGAACGCAATCATCCGCGGATTCGCCGG 239
Query 240 AAGTTCTCATCCTTCACTTGCGTTTTCATGGTATCGTTCCATGTTGCAGCGATCGTCGTC 299
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 240 AAGTTCTCATCCTTCACTTGCGTTTTCATGGTATCGTTCCATGTTGCAGCAATCTTCGTC 299
Query 300 A---TCGGCTTTGTGTAGAGTCGATGCTTTGACTTGTTCTTTCACTCTTAAAGCTTGTGC 356
| |||||| | ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 300 ATCGTCGGCTATATGTAGAGTCGATGCTTTGACTTGTTCTTTTACTCTTAAAGCTTGTGC 359
Query 357 TCGTGCGCTTTGTTCTTCCGCTATGGTTCAGA-TTCATTGTCAGATTAGTCGTCGTGGAT 415
||||||||||||||||||||||||| ||| | ||||||||||||||| ||||| ||||
Sbjct 360 ACGTGCGCTTTGTTCTTCCGCTATGGATCA-ACTTCATTGTCAGATTAACCGTCGGGGAT 418
Query 416 TCTCCGCTGATGCGCTTCTCTGTACTACGTTGCTTGATGCTTACTCTAAAAATGGGGATT 475
| ||||||||| ||||||| |||||||||||||||||||||||||||||||| || ||||
Sbjct 419 TATCCGCTGATTCGCTTCTTTGTACTACGTTGCTTGATGCTTACTCTAAAAACGGAGATT 478
Query 476 TGATTAGTGCGCT-GAAGTTGTTCGATGAAATGCCTGTGAGAGATGTTGCGTCGTGGAAT 534
| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TAATTAGTGCG-TATAAGTTGTTCGATGAAATGCCTGTGAGAGATGTTGCGTCGTGGAAC 537
Query 535 GCGTTGATTGCGGGGTTAGTGGCGGGGAATCGAGCAAATGAGGCGTTGGAGTTGTATAAA 594
|||||||| |||||||||||| | || |||||||| | ||||||| |||||||||||||
Sbjct 538 GCGTTGATCGCGGGGTTAGTGTCTGGTAATCGAGCGAGTGAGGCGATGGAGTTGTATAAG 597
Query 595 AGAATGGAAATGGAAGGGATTCGAAGAAGTGAAGTAACTGTTGTTGCTGCTTTGGGAGCT 654
|||||||||| |||||| ||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 598 AGAATGGAAACGGAAGGAATTAGAAGAAGTGAAGTAACTGTTGTTGCTGCTTTAGGAGCT 657
Query 655 TGTTCTCATTTGGGTGATGTTAAGGAAGGTGAAAAGATCCTCCATGGATACAATAAAGAT 714
||||||||||||||||||||||||||||||||||| ||| ||||||||||| || |
Sbjct 658 TGTTCTCATTTGGGTGATGTTAAGGAAGGTGAAAATATCTTCCATGGATAC-----AG-T 711
Query 715 GCAAAGTTGGAGCATAATGTGATTGTTAGTAACGCGGTTATTGATATGTATTCGAAATGC 774
|| | |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 712 ---AA-----CG-ATAATGTGATTGTTAGTAACGCGGCTATTGATATGTATTCGAAATGC 762
Query 775 GGGTTTGTTGATAAAGCTTTTCAAGTGTTTGAACAATTCACGGGTAAGAAGAGTGTTGTA 834
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 763 GGGTTTGTTGATAAAGCTTATCAAGTGTTTGAACAATTCACTGGTAAGAAGAGTGTTGTT 822
Query 835 ACATGGAACACTATGATCACGGGGTTTGCAGTGCACGGAGAAGCACACAGAGCGTTGGAG 894
||||||||||||||||| || |||||||||||||| ||||||||||| ||||||||||||
Sbjct 823 ACATGGAACACTATGATTACAGGGTTTGCAGTGCATGGAGAAGCACATAGAGCGTTGGAG 882
Query 895 ATTTTCGAGAAGTTGGAGCATAATGGCATTAAGCCTGATGATGTCTCGTACTTAGCTGCT 954
||||| || ||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 883 ATTTTTGACAAGTTGGAGGATAATGGTATTAAGCCTGATGATGTCTCGTACTTAGCTGCT 942
Query 955 CTAACCGCGTGTAGACACACAGGATTAGTGGAGTATGGTATATCTATATTCAACAACATG 1014
|||| ||||||||||| | || ||||||||||||||| | ||| ||||||| || |||
Sbjct 943 TTAACTGCGTGTAGACATGCGGGGTTAGTGGAGTATGGTTTGTCTGTATTCAATAATATG 1002
Query 1015 GCTTGTAACGGAGTTGAGCCTAACATGAAGCATTACGGTTGTGTAGTTGATCTGTTAAGC 1074
|||||||| || ||||||| |||||||||||| || |||||||| |||||||||||||||
Sbjct 1003 GCTTGTAAGGGCGTTGAGCGTAACATGAAGCACTATGGTTGTGTGGTTGATCTGTTAAGC 1062
Query 1075 CGTGCAGGAAGGCTGAGAGAAGCTCACGACATTATATGTTCGATGTCGATGGTTCCGGAT 1134
|||||||||||| |||||||||||||||| || |||||||| ||||||||| ||||||||
Sbjct 1063 CGTGCAGGAAGGTTGAGAGAAGCTCACGATATCATATGTTCAATGTCGATGATTCCGGAT 1122
Query 1135 CCTGTTTTGTGGCAGAGCCTTCTTGGAGCTTCAGAGATTCACAATAATGTCGAAATGGCT 1194
|||||||||||||||||||||||||||||||| |||||| | | | |||| |||||||||
Sbjct 1123 CCTGTTTTGTGGCAGAGCCTTCTTGGAGCTTCGGAGATTTATAGTGATGTTGAAATGGCT 1182
Query 1195 GAGATAGCTTCTAGGAAAATAAAGGAAATGGGTGTTAACAATGACGGTGATTTTGTGTTG 1254
||||| ||||||||| |||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1183 GAGATTGCTTCTAGGGAAATAAAGGAAATGGGAGTTAACAATGATGGTGATTTTGTGTTG 1242
Query 1255 CTATCAAACGTTTATGCAGCTCAGGGACGGTGGAAGGACGTAGGACTAGTGAGAGATGAT 1314
||||| || |||||||| || |||||||||||||| || ||||||| |||||||||||||
Sbjct 1243 CTATCGAATGTTTATGCTGCGCAGGGACGGTGGAAAGATGTAGGACGAGTGAGAGATGAT 1302
Query 1315 ATGGAAAGCAAACAAGTGAAGAAAGTTCCGGGTATTAGCTACATAGAAGCCAAAGGAACG 1374
|||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||
Sbjct 1303 ATGGAAAGCAAACAAGTGAAGAAAATTCCAGGTCTTAGCTACATAGAAGCCAAAGGAACG 1362
Query 1375 ATTCATCAATTCCACAACAGTGACAAGAGCCATGAACAGTGGAGAGAGATTTATGAGAAG 1434
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1363 ATTCATGAATTCTACAACAGTGACAAGAGCCATGAACAGTGGAGAGAGATTTATGAGAAG 1422
Query 1435 ATCGACGAGATCAGGTTCAAGATAAGGGAGGATGGTTACGTGGCGCAGACGGGACTTGTG 1494
||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1423 ATCGATGAGATCAGGTTCAAGATAAGAGAGGATGGTTACGTGGCGCAGACAGGACTTGTG 1482
Query 1495 TTGCACGACATAGGAGAGGAAGAGAAAGAGAACGCTTTGTGCTATCACAGCGAGAAATTG 1554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1483 TTGCACGACATAGGAGAGGAAGAGAAAGAGAACGCTTTGTGCTATCACAGCGAGAAATTG 1542
Query 1555 GCGGTGGCCTACGGACTGATGATGATAGATGGCGCGGACGAGGAGAGTCCG 1605
|||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1543 GCGGTGGCCTACGGACTGATGATGATGGATGGTGCGGACGAGGAGAGTCCG 1593
Score = 152 bits (82), Expect = 1e-35
Identities = 84/85 (99%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 1605 GTTCGATTTCATAGGTTCAAAGATGGTTCTTGCTCTTGCAGAGATTTTTGGTAACGTTAC 1664
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1693 GTTCGGTTTCATAGGTTCAAAGATGGTTCTTGCTCTTGCAGAGATTTTTGGTAACGTTAC 1752
Query 1665 AAAATTAAGAGGGTGGCAATTTTAA 1689
|||||||||||||||||||||||||
Sbjct 1753 AAAATTAAGAGGGTGGCAATTTTAA 1777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83483506335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5