BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313937
Length=2337
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14650.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/su... 3637 0.0
AT1G14640.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/su... 2316 0.0
AT5G12280.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/su... 294 2e-78
AT5G06890.1 | Symbols: | Ubiquitin-like superfamily protein | ... 122 1e-26
> AT1G14650.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein / ubiquitin family protein |
chr1:5027662-5030792 FORWARD LENGTH=2789
Length=2789
Score = 3637 bits (1969), Expect = 0.0
Identities = 2240/2366 (95%), Gaps = 37/2366 (2%)
Strand=Plus/Plus
Query 1 ATGTTGAGCTCGATGCAGATACTGCCACTGGAGGCTCCTCCTACCGACGGGAAGTTAGGT 60
||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 160 ATGTTCAGCTCGATGCAGATACTGCCACTGGAGGCTCCTCCTACGGATGGGAAGTTAGGT 219
Query 61 CCACTTCCTCCGTCGCAATTAACTGATCAGGAAGTCGAAGAGATGGAGTTGCAAGCAGAG 120
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 220 CCACTTCCTCCGTCGCAATTAACAGATCAGGAAGTCGAAGAGAGGGAGTTGCAAGCAGAG 279
Query 121 CAAAACAATTCAAATCAAG---CTCCGGCGGCTGTTGCGACTCACACAAGGACTATTGGA 177
||||| |||||||||| || |||||||||||||||| |||||||| |||||||| |||
Sbjct 280 CAAAATAATTCAAATCTAGCTCCTCCGGCGGCTGTTGCTACTCACACGAGGACTATCGGA 339
Query 178 ATTATTCATCCACCTCCAGATATCAGAACTATTGTTGAGAAAACGGCTCAGTTTGTTTCC 237
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 340 ATCATTCATCCACCTCCAGATATCAGAACTATTGTTGAGAAAACGGCTCAGTTTGTCTCC 399
Query 238 AAAAACGGGTTGGAGTTTGAAAAGAGGATTATTGTTAGTAATGAAAAGAATGCCAAGTTC 297
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 400 AAAAACGGTTTGGAGTTTGAAAAGAGGATTATTGTTAGTAATGAAAAGAATGCTAAGTTC 459
Query 298 AACTTTTTGAAGAGCTCAGATCCTTATCATGCCTTTTACCAGCACAAGCTCACTGAATA- 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 AACTTTTTGAAGAGCTCAGATCCTTATCATGCCTTTTACCAGCACAAGCTCACTGAATAC 519
Query 357 ----C-C-G--T---------GCTCAGGGTACTGATGATTCAGATGG---TACAGATCTT 396
| | | | |||||||||||||||||||||||||| ||||||||
Sbjct 520 CGTGCTCAGAATAAAGACGGAGCTCAGGGTACTGATGATTCAGATGGTACTACAGATCCC 579
Query 397 CAACTTGATACTGCTGCTGCTGATGAGTCTGAGGCAGGTGATGCACAACCCGATCTTCAG 456
||||||||||||| ||||||||||||||||| || |||||| |||||||||| ||||||
Sbjct 580 CAACTTGATACTGGAGCTGCTGATGAGTCTGAAGCTGGTGATACACAACCCGACCTTCAG 639
Query 457 GCTCAGTTTAGGATTCCTCCTAAGCCTCTAGAACCTCCGGAGCCTGAGAAGTATACAGTT 516
||||| |||||||||||| |||||||| | ||| ||||||| ||||||||||||||||||
Sbjct 640 GCTCAATTTAGGATTCCTTCTAAGCCTTTGGAAGCTCCGGAACCTGAGAAGTATACAGTT 699
Query 517 AGACTTCCTGAAGGGATCACGGGCGAGGAGCTTGATATTATTAAGCTTACAGCACAGTTT 576
||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 700 AGACTTCCTGAAGGGATCACGGGTGAAGAGCTTGATATTATTAAGCTCACAGCACAGTTT 759
Query 577 GTGGCACGGAATGGGAAATCGTTTTTAACGGGATTGACGAGTAGAGA-AATCAACAATCC 635
|||||||||||||||||||||||| ||||||||||| ||| |||||| || |||||||||
Sbjct 760 GTGGCACGGAATGGGAAATCGTTTCTAACGGGATTGTCGAATAGAGAGAA-CAACAATCC 818
Query 636 TCAGTTTCAGTTTATGAAGCCAACACATAGCATGTTCACtttttttACTTCTCTGGTTGA 695
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 819 TCAGTTTCATTTTATGAAGCCAACACACAGCATGTTCACTTTTTTTACTTCTCTGGTTGA 878
Query 696 TGCGTATTCAGAAGTTTTAATGCCTCCCAAAGATTTGAAAGAAAAGCTGAGAAAGAGTGT 755
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 TGCGTATTCGGAAGTATTAATGCCTCCCAAAGATTTGAAAGAAAAGCTGAGAAAGAGTGC 938
Query 756 TGCTGATTTGACTACTGTTCTTGAGCGTTGTTTGCATCGTCTT-GAATGGGATCGTTCTC 814
|||||||||||| ||||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 939 TGCTGATTTGACGACTGTTCTTGAGCGTTGTTTGCATCGT-TTGGAATGGGATCGTTCCC 997
Query 815 AGGAGCAGCAGAAGAAGAAAGAAGAGGATGAGAAAGAGCTGGAGCGAGTGCAGATGGCTA 874
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 998 AGGAGCAGCAGAAGAAGAAAGAAGAGGATGAGAAAGAGCTTGAGCGAGTGCAGATGGCTA 1057
Query 875 TGATTGATTGGCATGATTTTGTGGTGGTTGAGTCGATAGATTTTGCGGACGAGGAAGATG 934
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1058 TGATTGATTGGCATGATTTTGTGGTTGTTGAGTCGATAGATTTTGCGGACGAGGAAGATG 1117
Query 935 AAGAGTTACCACCGCCTATGACACTTGACGAGGTTATAAGGAGGAGCAAAGCATCAGCCA 994
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1118 AAGAGTTGCCACCGCCTATGACACTTGACGAGGTTATAAGGAGGAGCAAAGCATCAGCCA 1177
Query 995 TGGAAGAAGATGAAATTGTTGAGCCTGGAAAGGAGGTCGAAATGGAAATGGACGAAGAAG 1054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 TGGAAGAAGATGAAATTGTTGAGCCTGGAAAGGAGGTCGAAATGGAAATGGACGAAGAAG 1237
Query 1055 AAGTTAAGCTTGTCGCAGAAGGAATGAGAGCAGCAAACCTAGAAGAGAATGTTAAGATTG 1114
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1238 AAGTTAAGCTTGTTGCAGAAGGAATGAGAGCAGCAAACCTAGAAGAGAATGTTAAGATTG 1297
Query 1115 AAAATGTACATGATGAAGAAGCACCTATGAGAATTGTTAAGAACTGGAAGAGGCCAGAAG 1174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1298 AAAATGTACATGATGAAGAAGCACCTATGAGAATTGTTAAGAACTGGAAGAGGCCAGAAG 1357
Query 1175 ACAGGATCCCAACAGAGAGAGATCCAACTAAAGTTGTTGTATCACCAATTACTGGCGAGC 1234
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 1358 ACAGGATCCCAACAGAGAGAGATCCAACTAAAGTTGTTATATCACCAATTACTGGAGAGC 1417
Query 1235 TGATTCCCATCAACGAGATGTCTGAGCACATGAGGATTTCTCTTATTGATCCTAAGTTCA 1294
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1418 TGATTCCCATTAACGAGATGTCTGAGCACATGAGGATTTCTCTTATTGATCCTAAGTTCA 1477
Query 1295 AAGAACAGAAGGATCGGATGTTTGCTAAGATTCGTGAAACCACTCTTGCACAAGATGATG 1354
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1478 AAGAACAGAAGGATCGGATGTTTGCTAAGATTCGTGAGACCACTCTTGCACAAGATGATG 1537
Query 1355 AGATTGCTAAAAACATAGTCGGGTTGGCCCGCCTGCGTCCGGATATCTTTGGAACAACAG 1414
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1538 AGATTGCTAAAAACATAGTCGGGTTGGCCCGCCTGCGTCCTGATATCTTTGGAACAACCG 1597
Query 1415 AAGAAGAAGTCTCAAATGCTGTAAAAGCAGAGATTGAGAAGAAGAAAGATGAGCAGCCCA 1474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1598 AAGAAGAAGTCTCAAATGCTGTAAAAGCAGAGATTGAGAAGAAGAAAGATGAGCAGCCCA 1657
Query 1475 AGCAAGTGATATGGGATGGTCACATAGGAAGTATTGGTCGCACAGCAAACCAAGCCTTGA 1534
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1658 AGCAAGTGATATGGGATGGTCACACAGGAAGTATTGGTCGCACAGCAAACCAAGCCTTGA 1717
Query 1535 CTCAGAACGCTAATGGAGAGGAGCAAGGTGATGGCGTTTACGGAGATCCCAATAGCTTCC 1594
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1718 GTCAGAACGCTAATGGAGAGGAGCAAGGTGATGGCGTTTACGGAGATCCCAATAGCTTCC 1777
Query 1595 CTGGTCCAGCTGCTCTTCCTCCTCCTCGACCAGGTGTCCCAATAGTCCGACCATTACCAC 1654
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1778 CTGGTCCAGCTGCTCTTCCACCTCCTCGACCAGGTGTCCCAATAGTCCGACCATTGCCAC 1837
Query 1655 CCCCTCCTAATCTCGCCCTGAACCTCCCTCGTCCTCCCCCTTCTGCTCAGTACCCCGGTG 1714
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1838 CACCTCCTAATCTCGCCTTGAACCTCCCTCGTCCTCCCCCTTCTGCTCAGTACCCCGGTG 1897
Query 1715 CACCAAGGCCATTAGGTGTTCCGATGATGCAACCTATGCATCAACAACACCAGTTCTCGA 1774
||||||||||| ||||||||||||||||||| || |||||||||||||||||| || | |
Sbjct 1898 CACCAAGGCCACTAGGTGTTCCGATGATGCAGCCCATGCATCAACAACACCAGCTCACAA 1957
Query 1775 TGCCGGGGCCACCAGGACAGCCGCAGATGATGATGAACCGACCACCACAGATGATGGCAC 1834
|||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1958 TGCCAGGGCCACCAGGACACCCGCAGATGATGATGAACCGACCACCACAGATG----CA- 2012
Query 1835 AGCCTGGTATGCATGTGCCACCTCCACCGGGATCTCAGTTTGCTC--C-TATGCAAATTC 1891
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 2013 -GCCTGGTATGCATGTGCCACCTCCACCGGGATCTCAGTTTGCTCATCATATGCAAATTC 2071
Query 1892 CTAGACCTTATGGTCAGCTTCCACCGTCTGCAATGGGGATGATGCAACCACCACCTATGC 1951
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2072 CTAGACCTTATGGTCAGCTTCCACCATCTGCAATGGGGATGATGCAACCACCACCTATGC 2131
Query 1952 CTGGGATGGCTCCTCCTCCACCTCATGAGGAGGCACCACCTCCTCTTCCTGAGGAACCAG 2011
|||||||||||||||||||||| | |||||||| ||||| |||||||||||||||||||
Sbjct 2132 CTGGGATGGCTCCTCCTCCACCACCCGAGGAGGCTCCACCACCTCTTCCTGAGGAACCAG 2191
Query 2012 AGCCAAAGAGACAAAAGTTCGACGAGTCAGCCCTTGTTCCAGAAGACCAGTTTCTTGCTC 2071
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2192 AGGCAAAGAGACAAAAGTTCGATGAGTCAGCCCTTGTTCCAGAAGACCAGTTTCTTGCTC 2251
Query 2072 AGCATCCGGGTCCGGCTACAATCAGGGTTTCTATGCCAAACGTGGATGATGGGCAAGTCA 2131
||||||||||||||||||||||||||||||||| |||||||| | ||||||| ||| | |
Sbjct 2252 AGCATCCGGGTCCGGCTACAATCAGGGTTTCTAAGCCAAACGAGAATGATGGACAATTTA 2311
Query 2132 TTGAGATCACAGTGCAGTCATTATCCGAAAACGTGGGAAGTTTGAAGGAGAAAATAGCTG 2191
| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 2312 TGGAGATCACAGTGCAGTCGTTATCTGAAAACGTGGGAAGTTTGAAGGAGAAAATAGCTG 2371
Query 2192 GGGAGATACAAATTCCAGCAAACAAACAGAAGATAAGTGGAAAAGCTGGGTTCTTAAAGG 2251
||||||| ||||| |||||||||||||||||| | ||||||||||| |||||||||||||
Sbjct 2372 GGGAGATTCAAATCCCAGCAAACAAACAGAAGTTGAGTGGAAAAGCAGGGTTCTTAAAGG 2431
Query 2252 ACAACATGTCGCTTGCGCATTACAATGTCGGAGCAGGAGAAATCCTAACATTGTCTTTGA 2311
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2432 ACAACATGTCGCTTGCACATTACAATGTCGGAGCAGGAGAAATCCTAACATTGTCTTTGA 2491
Query 2312 GAGAACGTGGTGGGAGAAAGAGATAG 2337
| ||||||||||||||||||||||||
Sbjct 2492 GGGAACGTGGTGGGAGAAAGAGATAG 2517
> AT1G14640.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein | chr1:5023656-5025955 FORWARD
LENGTH=2208
Length=2208
Score = 2316 bits (1254), Expect = 0.0
Identities = 1925/2243 (86%), Gaps = 69/2243 (3%)
Strand=Plus/Plus
Query 10 TCGATGCAGATACTGCCACTGGAGGCTCCTCCTACCGACGGGAAGTTAGGTCCACTTCCT 69
|||||| ||||||| |||||||||||||||||| | |||||||| |||||||||||||||
Sbjct 10 TCGATGAAGATACTACCACTGGAGGCTCCTCCTGCTGACGGGAATTTAGGTCCACTTCCT 69
Query 70 CCGTCGCAATTAACTGATCAGGAAGTCGAAGAG-ATGGAGTTGCAAGCAGAGCAAAACAA 128
|||||||||||||| ||| | ||| || ||||| || ||||| |||| ||||||||||||
Sbjct 70 CCGTCGCAATTAACGGATGAAGAAATCAAAGAGAAT-GAGTTTCAAGGAGAGCAAAACAA 128
Query 129 TTCAAATCAAGCTCCGGCGGCTGTTGCGACTCACAC-AAGGACTATTGGAATTATTCATC 187
||||| |||| |||| ||||| || ||||| || || | || ||||| ||| |||
Sbjct 129 TTCAATTCAAACTCCCATAGCTGTGGCTACTCATACGAA-TCCAATCGGAATCATTTATC 187
Query 188 CACCTCCAGATATCAGAACTATTGTTGAGAAAACGGCTCAGTTTGTTTC-CAAAAACGGG 246
|||||||||| ||| ||| || || |||| ||||||||| |||||||| | |||||||
Sbjct 188 CACCTCCAGAGATCCGAAAAATCGTCGAGACAACGGCTCAATTTGTTTCGC-AAAACGGT 246
Query 247 TTGGAGTTT-GAAA-AGAGGATT-ATTGTTAGTAATGAAAAGAATGCCAAGTTCAACTTT 303
|||| |||| |||| | | | || | || || | || ||||| || |||| ||||
Sbjct 247 TTGGCGTTTGGAAACA-AAG-TTAAAACAGAG-AAAGCCAATAATGCTAATTTCAGCTTT 303
Query 304 TTGAAGAGCTCA-GATCCTTATCATGCCTTTTACCAGCACAAGCTCACTGAATACCG-TG 361
||||| || | | |||||||||||| |||||||| | ||||| ||||||| || | ||
Sbjct 304 TTGAAAAG-TGATAATCCTTATCATGGCTTTTACCGGTACAAGGTCACTGAGTATAGTTG 362
Query 362 CTCAGGGTAC-TGA-TGA-TTCAGATGGTACAGATCTTCAACTTGATACTGCTGCTGCTG 418
||| | | ||| || ||| | ||||| ||| | | |||||| | | | |
Sbjct 363 -TCA-TATTCGTGACGGAGCTCA-A-GGTACTGAT-GT--AGATGATACAGAAGAT-CCC 414
Query 419 ATGA-GT-CTGAGGCAG-GTGATGCACAACCCGATCTTCAGGCTCAGTTTAGGATTCCTC 475
| | | ||| | || ||||||| |||| || ||||||||||| |||||| |||||
Sbjct 415 A-AACTTGATGATG-AGTCTGATGCAAAACCTGACCTTCAGGCTCAATTTAGGGCTCCTC 472
Query 476 CTAAGCCTCTAGAACCTCCGGAGCCTGAGAAGTATACAGTTAGACTTCCTGAAGGGATCA 535
|||| | ||||| | || || |||||||||||||| ||||||||||||||||||||||
Sbjct 473 GTAAGATTTTAGAAGCACCTGAACCTGAGAAGTATACTGTTAGACTTCCTGAAGGGATCA 532
Query 536 CGG-GCGAGGAGCTTGATATTATTAAGCTTACAGCACAGTTTGTGGCACGGAATGGGAAA 594
|| | | ||||||||||||||||||| || || ||||||||||| |||||||| ||
Sbjct 533 TGGAG-GCTGAGCTTGATATTATTAAGCACACGGCGCAGTTTGTGGCGCGGAATGGTCAA 591
Query 595 TCGTTTTTAACGGG-ATTGACGAGTAGAGAAATCAACAATCCTCAGTTTCAGTTTATGAA 653
|||||||||| ||| ||||| | ||||||| | || ||| |||||||||||||||||||
Sbjct 592 TCGTTTTTAA-GGGAATTGATGCGTAGAGAGGTGAATAATTCTCAGTTTCAGTTTATGAA 650
Query 654 GCCAACACATAGCATGTTCACtttttttACTTCTCTGGTTGATGCGTATTCAGAAGTTTT 713
|||||||||||| |||||||||||||| |||||| |||||||||||||||| ||||| ||
Sbjct 651 GCCAACACATAGTATGTTCACTTTTTTCACTTCTTTGGTTGATGCGTATTCTGAAGTATT 710
Query 714 AATGCCTCCCAAAGATTTGAAAGAAAAGCTGAGAAAGAGTGTTGCTGATTTGACTACTGT 773
|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 711 GATGCCTCCCAGAGATTTGAAAGAAAAGCTGAGAAAGAGTGTTGCTGATTTGACGACTGT 770
Query 774 TCTTGAGCGTTGTTTGCATCGTCTTGAATGGGATCG-TTCTCAGGAGCAGCAGAAGAAGA 832
||| |||||||||||| |||| ||||| |||||||| ||| |||||| || ||||||| |
Sbjct 771 TCTCGAGCGTTGTTTGAATCGGCTTGAGTGGGATCGTTTC-CAGGAGGAGGAGAAGAACA 829
Query 833 AAGAAGAGGATGAGAAAGAGCTGGAGCGAGTGCAGATGGCTATGATTGATTGGCATGATT 892
|||||||||||||||||||| |||| |||||||||||| ||||||||||||| | ||||
Sbjct 830 AAGAAGAGGATGAGAAAGAGAAGGAGAGAGTGCAGATGGTTATGATTGATTGGAAAGATT 889
Query 893 TTGTGGTGGTTGAGTCGATAGATTTTGCGGACGAGGAAGATGAAGAGTTACCACCGCCTA 952
||| || |||||||| ||||||||||| |||||||| ||| |||| || ||| |||||
Sbjct 890 TTGCAGTTGTTGAGTCTATAGATTTTGCAGACGAGGAGGATAAAGATTTGCCAATGCCTA 949
Query 953 TGACACTTGACGAGGTTATAAGGAGGAGCAAAGCATCAGCCATGGAAGAAGATGAAATTG 1012
|||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 950 TGACACTTGAGGAGGTTATTAGGAGGAGCAAAGTTTCAGCCATGGAAGAAGATGAAATTG 1009
Query 1013 TTGAGCCTGGAAAGGAGGTCGAAATGGAAATGGACGAAGAAGAAGTTAAGCTTGTCGCAG 1072
|||||||||||||||| || || ||||| ||||| |||||||||||||||||||| ||||
Sbjct 1010 TTGAGCCTGGAAAGGAAGTTGAGATGGATATGGATGAAGAAGAAGTTAAGCTTGTTGCAG 1069
Query 1073 AAGGAATGAGAGCAGCAAACCTAGAAGAGAATGTTAAGAT-TGAAAATGTACA-TGATGA 1130
|||||||||||||||| ||||| |||||| ||||| | | || || | | ||| ||
Sbjct 1070 AAGGAATGAGAGCAGCGAACCTGGAAGAGTATGTT-GGCTCTG----TGGAGATTGAAGA 1124
Query 1131 AGAAGCACCTATGAGAATTGTTAAGAACTGGAAGAGGCCAGAAGACAGGATCCCAACAGA 1190
||||||||| ||||||||||||||||||||||||||||| ||||| ||| | | |||||
Sbjct 1125 AGAAGCACCAATGAGAATTGTTAAGAACTGGAAGAGGCCTGAAGATAGGTTTCTGACAGA 1184
Query 1191 GAGAGATCCAACTAAAGTTGTTGTATCACCAATTACTGGCGAGCTGATTCCCATCAACGA 1250
||||||| | | |||||||||| |||||| |||||||| |||||||||||||| | |||
Sbjct 1185 GAGAGATTCGAGTAAAGTTGTTATATCACGGATTACTGGTGAGCTGATTCCCATTACCGA 1244
Query 1251 GATGTCTGAGCACATGAGGATTTCTCTTATTGATCCTAAGTTCAAAGAACAGAAGGATCG 1310
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1245 GATGTCTGAGCACATGAGGATTTCTCTTATTGATCCTAAGTTTAAAGAACAGAAGGATCG 1304
Query 1311 GATGTTTGCTAAGATTCGTGAAACCACTCTTGCACAAGATGATGAGATTGCTAAAAACAT 1370
||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 1305 GATGTTTGCTAAGATTCGTGAGACAACTCTCGCACAAGATGATGAGATTGCTAAAAACAT 1364
Query 1371 AGTCGGGTTGGCCCGCCTGCGTCCGGATATCTTTGGAACAACAGAAGAAGAAGTCTCAAA 1430
||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1365 TGTCGGGTTGGCCCGCCTCCGTCCTGATATCTTTGGAACAACAGAAGAAGAAGTTTCAAA 1424
Query 1431 TGCTGTAAAAGCAGAGATTGAGAAGAAGAAAGATGAGCAGCCCAAGCAAGTGATATGGGA 1490
||||||||||||||| |||||| | || ||||||||||| || || ||||| ||||||||
Sbjct 1425 TGCTGTAAAAGCAGATATTGAG-A-AA-AAAGATGAGCAACCGAAACAAGTAATATGGGA 1481
Query 1491 TGGTCACA-TAGGAAGTATTGGTCGCACAGCAAACCAAGCCTTGACTCAGAACGCTAATG 1549
|||||||| | |||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1482 TGGTCACACT-GGAAGTATTGGTCGCACAGCAAACCAAGCCTTGACTCAGAACTCCAAT- 1539
Query 1550 GAGAGGAGCAAGGTGATGGCGTTTACGGAGATCCCAATAGCTTCCCTGGTCCAGCTGCTC 1609
| || |||||||| ||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1540 G-GA-GAGCAAGGCGATGGCGTTTATGGTGATCCCAATAGCTTCCCTGGTCCAGCTGCTT 1597
Query 1610 TTCCTCCTCCTCGACCAGGTGTCCCAA-TAGTCCGACCATTACCACCCCCTCCTAATCTC 1668
||||||||||||||||||||||||||| | ||||| ||| | ||||| |||| ||||||
Sbjct 1598 TTCCTCCTCCTCGACCAGGTGTCCCAACT-GTCCGGCCACTGCCACCACCTCAAAATCTC 1656
Query 1669 GCCCTGAACCTCCCTCGTCCTCCCCCTTCTGCTCAGTACCCCGGTGCACCAAGGCCATTA 1728
||| ||||||| ||||||||||| ||||||| ||||||||| ||||||||||||||||||
Sbjct 1657 GCCTTGAACCTTCCTCGTCCTCCTCCTTCTGTTCAGTACCCTGGTGCACCAAGGCCATTA 1716
Query 1729 GGTGTTCCGATGATGCAACCTATGCATCAACAACACCAGTTCTCGATGCCGGGGCCACCA 1788
|||||||| |||||||| || ||| |||||||||||||| |||| ||| | |||||| ||
Sbjct 1717 GGTGTTCCAATGATGCAGCCCATGTATCAACAACACCAGCTCTCTATGTCTGGGCCA-CA 1775
Query 1789 -GGACAGCC-GCAGATGATGATGAACCGACCACCACAGATGATGGCACAGCCTGGTATGC 1846
||||| || || |||||||||| ||||||||||| | || ||| | |||| |||||
Sbjct 1776 TGGACATCCTTCA-ATGATGATGAGTCGACCACCACA-A--AT-GCA-A-CCTGTTATGC 1828
Query 1847 ATGTGCCACCTCCACCGGGATCTCAGTTTGCTCCTATGCAAATTCCT-AGACCTTATGGT 1905
|||||| ||||||||||||||||||||| ||| ||||||| ||||| | ||||||||||
Sbjct 1829 GTGTGCCGCCTCCACCGGGATCTCAGTTTTCTCATATGCAAGTTCCTCA-ACCTTATGGT 1887
Query 1906 CAGCTTCCACCGTC-TGCAATGGGGATGATGCAACCACCACCTATGCCTGGGATGGCTCC 1964
|||||||||||| | | | ||||||||||||||||||||||||||| ||| |||| ||||
Sbjct 1888 CAGCTTCCACCG-CTTTCGATGGGGATGATGCAACCACCACCTATGGCTGAGATGCCTCC 1946
Query 1965 TCCTCCACCTCATGAGGAGGCACCACCTCCTCTTCCTGAGGAACCAGAGCCAAAGAGACA 2024
||||||||| | | |||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 1947 TCCTCCACCACCCGGGGAGGCACCACCGCCTCTTCCTGAGGAGCCAGAGCCAAAAAGACA 2006
Query 2025 AAAGTTCGACGAGTCAGCCCTTGTTCCAGAAGACCAGTTTCTTGCTCAGCATCCGGGTCC 2084
||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2007 GAAGCTCGATGAGTCAGCCCTTGTTCCAGAAGACCAGTTTCTTGCTCAGCATCCGGGTCC 2066
Query 2085 GGCTACAATCAGGGTTTCTATGCCAAACGTGGATGATGGGCAAGTCATTGAGATCACAGT 2144
|||||||||||||||||||| |||||||| | ||||||| |||||||| |||||||||||
Sbjct 2067 GGCTACAATCAGGGTTTCTAAGCCAAACGAGAATGATGGACAAGTCATGGAGATCACAGT 2126
Query 2145 GCAGTCATTATCCGAAAACGTGGGAAGTTTGAAGGAGAAAATAGCTGGGGAGATACAAAT 2204
|||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 2127 GCAGTCGTTATCCGAAAACGTGGGAAGTTTGAAGGAGAAAATAGCTGGGGAAATGCAAAT 2186
Query 2205 TCCAGCAAACAAACAGAAGATAA 2227
||||||||||||||||||| |||
Sbjct 2187 TCCAGCAAACAAACAGAAG-TAA 2208
> AT5G12280.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/surp
RNA-binding domain-containing protein | chr5:3972014-3973636
REVERSE LENGTH=1260
Length=1260
Score = 294 bits (159), Expect = 2e-78
Identities = 243/284 (86%), Gaps = 4/284 (1%)
Strand=Plus/Plus
Query 2027 AGTTCGACGAGTCAGCCCTTGTTCCAGAAGACCAGTTTCTTGCTCAGCATCCGGGT-CCG 2085
|||| |||||||| | |||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 971 AGTTTGACGAGTCTGTCCTTGTTCCAGAAGACCAGTTTCTTGCTCAACATCCGGGTTCCT 1030
Query 2086 GCTACAATCAGGGTTTCTATGCCAAACGTGGATGATGGGCAAGTCATTGAGATCACAGTG 2145
| || |||| ||||||| | ||| || |||||| || ||||| || |||||||||||
Sbjct 1031 -CAACGATCATGGTTTCTGTTCCAGACCCCGATGATTGGAAAGTCGTTAAGATCACAGTG 1089
Query 2146 CAGTCATTATCCGAAAACGTGGGAAGTTTGAAGGAGAAAATAGCTGGGGAGATACAAATT 2205
||||| |||| |||||||||| ||||||||||||||||||| |||| ||||| ||| ||
Sbjct 1090 CAGTCGCTATCGGAAAACGTGGCAAGTTTGAAGGAGAAAATATCTGGCGAGATCCAATTT 1149
Query 2206 CC-AGCAAACAAACAGAAGATAAGTGGAAAAGCTGGGTTCTTAAAGGACAACATGTCGCT 2264
|| | |||||||||||||| || |||||||||| || |||||||||||||||| ||||||
Sbjct 1150 CCTA-CAAACAAACAGAAGTTACGTGGAAAAGCCGGATTCTTAAAGGACAACACGTCGCT 1208
Query 2265 TGCGCATTACAATGTCGGAGCAGGAGAAATCCTAACATTGTCTT 2308
||| |||||||| || |||||||| |||||| ||||| ||||||
Sbjct 1209 TGCACATTACAACGTGGGAGCAGGTGAAATCTTAACACTGTCTT 1252
> AT5G06890.1 | Symbols: | Ubiquitin-like superfamily protein
| chr5:2135743-2135943 FORWARD LENGTH=201
Length=201
Score = 122 bits (66), Expect = 1e-26
Identities = 84/93 (90%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 2097 GGTTTCTATGCCAAACGTGGATGATGGGCAAGTCATTGAGATCACAGTGCAGTCATTATC 2156
||||||| | ||| |||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 3 GGTTTCTGTTCCAGACGTCAATGATGGGCAAGTCATTGAGATCACAGTGCAGTCCTTATC 62
Query 2157 CGAAAACGTGGGAAGTTTGAAGGAGAAAATAGC 2189
||||||||||| ||||||||| |||||| ||||
Sbjct 63 CGAAAACGTGGCAAGTTTGAAAGAGAAAGTAGC 95
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116013459495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5