BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313939
Length=1437
Score E
Sequences producing significant alignments: (Bits) Value
AT1G34270.1 | Symbols: | Exostosin family protein | chr1:12492... 2198 0.0
> AT1G34270.1 | Symbols: | Exostosin family protein | chr1:12492411-12494544
REVERSE LENGTH=1624
Length=1624
Score = 2198 bits (1190), Expect = 0.0
Identities = 1360/1441 (94%), Gaps = 15/1441 (1%)
Strand=Plus/Plus
Query 1 ATGGTTCCTAAGATCGCATCAATGGCG---ACTAGAcctctctgctcacttccttact-t 56
||||||||||||||||||||||||||| |||||||||||||| ||| |||||| || |
Sbjct 31 ATGGTTCCTAAGATCGCATCAATGGCGTCTACTAGACCTCTCTGTTCAATTCCTT-CTAT 89
Query 57 attcctctctttctctctcctcttcgtcgtctcgcttctcttcttcttctcCAATTCCTT 116
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 90 CTTCCTCTCTTTCTCTCTCCTCTTCGTCGTCTCTCTTCTCTTCTTCTTCTCCAATTCCTT 149
Query 117 AATCTCCAACCCAAATCCGAGAATTTCACACAATACTCTCCAAAACGGTATCAATGTCTT 176
||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 150 AATCTCCAATCCAAATCCGAGCATTTCACACAACACTCTCCAAAACGGTATCAATGTCTA 209
Query 177 TGTAGCTGAGCTTCCAAGATCCCTAAACTATGGTCTTCTCGACAAGTACTGGTCCTCTTC 236
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 210 TGTAGCTGAGCTTCCAAGATCCCTAAACTATGGTCTTATCGACAAATACTGGTCCTCTTC 269
Query 237 TTCTCCAGATTCACGCATACCCAGTGACCCAGATCACCCGACCCGTAAAACCCATTTACC 296
| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 270 TACTCCAGATTCACGTATACCCAGTGACCCAGATCACCCGACCCGTAAAACCCA-TT--- 325
Query 297 CAAACCCGGTAAATACCCACCGTACCCAGAGAATCCGTTGATTAAGCAATACAGTGCCGA 356
| ||||| |||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct 326 C--ACCCGATAAATACCCACCGTACCCAGAGAACCCGTTGATCAAGCAATACAGTGCTGA 383
Query 357 GTATTGGATCATGGGTGACCTAGAAACCTCACCGGAGAAACGAATTGGATCTTTTGCTAA 416
||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 384 GTACTGGATCATGGGAGACCTAGAAACCTCACCAGAGAAACGAATTGGATCTTTTGCTAA 443
Query 417 AAGGGTTTTCAGTGAATCTGACGCTGATGTAGTCTTCGTGCCGTTCTTTGCGACGCTT-A 475
||||||||| |||||||||||||||||||||||||||||||| |||||||||||| || |
Sbjct 444 AAGGGTTTTTAGTGAATCTGACGCTGATGTAGTCTTCGTGCCTTTCTTTGCGACG-TTAA 502
Query 476 GTGCAGAGATGGAGCTTGGAAATGGAAAAGGTTCGTTTAGGAAGAAGAATGGTAACGAAG 535
||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||
Sbjct 503 GTGCAGAGATGGAGCTTGGAAATGGTAAAGGTTCGTTTAGAAAGAAGTCTGGTAACGAAG 562
Query 536 ATTATCAGAGACAGAGACAAGTTCTTGATTTTGTCAAGAACACTGAAGCTTGGAAACGAT 595
||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 563 ATTATCAAAGACAGAGACAAGTGCTTGATTTTGTCAAGAACACTAAAGCTTGGAAACGAT 622
Query 596 CCAATGGTCGTGATCACGTTTTTGTTCTAACTGACCCAGTTGCAATGTGGCATGTTCGTG 655
| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 623 CTAATGGTCGTGATCACGTTTTTGTTCTAACGGACCCTGTTGCAATGTGGCATGTTCGTG 682
Query 656 AGGAGATTGCTTTATCGATTCTTCTTGTGGTGGATTTTGGAGGCTGGTTTAGGCAAGATT 715
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 683 AGGAGATTGCTTTATCTATTCTTCTTGTGGTGGATTTTGGAGGATGGTTTAGGCAAGATT 742
Query 716 CTAAGTCATCTAACGGGACTAGCTTGCCTGAGAGGATAGAGCATACTCAAGTCTCTGTCA 775
||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 743 CTAAGTCGTCTAATGGGACTAGCTTGCCTGAGAGGATTCAGCATACTCAAGTCTCTGTCA 802
Query 776 TTAAGGATGTGATAGTTCCATATACGCATCTGCTTCCTAGCCTAGATTTGTCTCAGAACC 835
||||||||||||| ||||||||||||||| |||||||||| || ||||||||||||||||
Sbjct 803 TTAAGGATGTGATTGTTCCATATACGCATTTGCTTCCTAGACTGGATTTGTCTCAGAACC 862
Query 836 AGAGACGTCATAGCCTTCTTTATTTCAAAGGGGCTAAGCACAGACATCGGGGAGGGTTAA 895
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 863 AGAGACGTCATAGCCTTCTTTATTTTAAAGGCGCTAAGCACAGACATCGGGGAGGGTTAA 922
Query 896 TCAGAGAAAAGCTATGGGACTTGCTGGTCGATGAACAAGGCATTGTCATGGAAGAAGGTT 955
|||||||||| |||||||||||||||||| |||| | ||| ||||||||||||||||||
Sbjct 923 TCAGAGAAAAACTATGGGACTTGCTGGTCAATGAGCCTGGCGTTGTCATGGAAGAAGGTT 982
Query 956 TTCCTAATGCAACAGGAAGGGAACAATCAATAAGAGGAATGAGAAACTCAGAGTTCTGCT 1015
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 983 TTCCTAATGCAACAGGAAGGGAACAGTCGATAAGAGGAATGAGAAACTCAGAGTTCTGCT 1042
Query 1016 TACATCCAGCCGGTGACACTCCCACTTCATGCCGTCTCTTTGATGCCATTCAAAGTCTAT 1075
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1043 TACATCCAGCTGGTGACACTCCCACTTCATGCCGTCTCTTTGATGCCATTCAAAGTCTAT 1102
Query 1076 GCATCCCTGTGATTGTCAGCGACACCATAGAGCTCCCGTTTGAGGGAATGATCGATTACT 1135
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1103 GCATCCCTGTGATTGTCAGCGACACCATAGAGCTCCCGTTTGAGGGAATAATCGATTACT 1162
Query 1136 CAGAATTCTCGGTCTTTGTCC-CTGTAAGTGATGCATTAACACCTAAATGGTTGGCTAAT 1194
||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1163 CAGAATTCTCGGTTTTTG-CCTCTGTAAGTGATGCATTAACACCTAAATGGTTGGCTAAT 1221
Query 1195 CATCTCAGAAGGTTCTCTGAAAGAGAGAAGGAAACATTCAGAGGTAGAATGGCAAAGGTT 1254
|||||| ||||||||||||||||||||||||||||||| ||| ||||||| |||||||||
Sbjct 1222 CATCTCGGAAGGTTCTCTGAAAGAGAGAAGGAAACATTGAGAAGTAGAATAGCAAAGGTT 1281
Query 1255 CAGACAGTTTTTGTGTATGATAATGGTCAAGGCAATGGGATTGGACCAATTGAACCCAAT 1314
||| ||||||||||||||||||||||||| | | ||||||||||||| ||||||||||||
Sbjct 1282 CAGTCAGTTTTTGTGTATGATAATGGTCATGCCGATGGGATTGGACCTATTGAACCCAAT 1341
Query 1315 GGTGCGGTGAATCACATATGGAAGAAGGTTCAGCAGAAGGTGCCAATGGTGAAGGAAGCG 1374
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1342 GGTGCGGTGAATCACATATGGAAGAAGGTTCAGCAGAAGGTGCCAATGGTGAAGGAGGCA 1401
Query 1375 GTGATTAGGGAAAGGAGAAAACCAGCAGGTGCTTCCGTTCCACTTCGATGTCAATGTATC 1434
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1402 GTGATTAGGGAGAGGAGAAAACCAGCAGGTGCTTCCGTTCCACTTCGATGTCAATGTATC 1461
Query 1435 T 1435
|
Sbjct 1462 T 1462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70832968995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5