BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313960
Length=1095
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31260.1 | Symbols: ZIP10 | zinc transporter 10 precursor | ... 1668 0.0
> AT1G31260.1 | Symbols: ZIP10 | zinc transporter 10 precursor
| chr1:11175559-11177362 REVERSE LENGTH=1095
Length=1095
Score = 1668 bits (903), Expect = 0.0
Identities = 1034/1098 (94%), Gaps = 6/1098 (1%)
Strand=Plus/Plus
Query 1 ATGACTAActctcatgtcattttctctgcctccatcgctctctttctcctcctctccatc 60
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGACTAAATCTCATGTCATTTTCTCTGCCTCCATCGCTCTCTTTCTCCTACTCTCCATC 60
Query 61 tcgcatttcccgggagctctctctcAAT-CTGTCAAAGTTTG-CAAGTCCAAATCCAACA 118
|||||||||||||||||||||||||||| | | |||| ||| ||| || |||||||||
Sbjct 61 TCGCATTTCCCGGGAGCTCTCTCTCAATCCAAT-AAAGATTGCCAA-TCAAAATCCAACT 118
Query 119 ACACATGTATAGACAAAGACAAAGCATTAGATCTCAAACTCATAGCAATCTTCTCAATCC 178
|| |||||||||||||| ||||||||||||||||||||||| || ||||||||||||| |
Sbjct 119 ACTCATGTATAGACAAAAACAAAGCATTAGATCTCAAACTCTTATCAATCTTCTCAATTC 178
Query 179 TCATCACTAGTCTAATCGGTGTTTGCCTCCCGTTCTTCGCCCGATCAGTTCCCGCTTTCC 238
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 179 TCATCACTAGTCTAATCGGTGTTTGCCTCCCGTTCTTTGCCCGATCAATTCCCGCTTTCC 238
Query 239 AACCCGAGAAATCTCACTTCCTCATCGTAAAATCTTTTGCCTCCGGAATCATCCTCTCCA 298
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 239 AACCCGAGAAATCTCACTTCCTCATCGTAAAATCTTTCGCCTCCGGAATCATCCTTTCCA 298
Query 299 CTGGTTTCATGCATGTCTTGCCTGATTCTTTCGACATGCTTTCATCTCCTTGTCTTAACA 358
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 299 CTGGTTTCATGCATGTCTTGCCTGATTCTTTCGAGATGCTTTCATCTCCTTGTCTTAACG 358
Query 359 ATAACCCCTGGCACAAGTTTCCTTTCACAGGATTTGTTGCCATGATCTCGGCCGTGTTCA 418
|||||||||||||||||||||||||| | || ||||| |||||||| || ||||||||||
Sbjct 359 ATAACCCCTGGCACAAGTTTCCTTTCGCCGGCTTTGTAGCCATGATGTCTGCCGTGTTCA 418
Query 419 CACTAATGGTTGACTCTATTACCACTAGCGTCTTCACCAAGTCAGGCAGGAGAGATCTAA 478
| || |||||||||||||||||||| |||||||||||||||||||| |||| |||||||
Sbjct 419 CGCTCATGGTTGACTCTATTACCACCAGCGTCTTCACCAAGTCAGGAAGGAAAGATCTAC 478
Query 479 GTGCTGACATAGCATCCGTTGAGACTCCTGACCGAGAGATAGGGCACGTACATGTTCATG 538
|||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 479 GTGCTGACGTAGCATCCGTTGAGACTCCTGACCAAGAGATAGGGCACGTACAGGTTCATG 538
Query 539 GCCATGTTCATAGCCATGCCCTTCATCATAATCTTCAAGGAGAGAATGATAAGGAGCTTG 598
||||||||||||||||| | |||| ||| |||||||| |||||||||||||| |||||||
Sbjct 539 GCCATGTTCATAGCCATACTCTTCCTCACAATCTTCATGGAGAGAATGATAAAGAGCTTG 598
Query 599 GTTCTGATTTACAGCTTCTGCGGTATCGTGTTATTGCAATCGTACTGGAGCTAGGAATAG 658
||||| ||||||||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 599 GTTCTTATTTACAGCTTCTGCGGTATCGTATTCTTGCAATCGTATTGGAGCTAGGAATAG 658
Query 659 TGGTCCACTCGATAGTGATAGGACTATCCGTAGGAGCCACTAACAATACTTGCACCATCA 718
|||| || |||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 659 TGGTGCAGTCGATAGTGATAGGACTATCGGTAGGAGACACTAACAATACTTGCACCATCA 718
Query 719 AAGGTCTCGTCGCTGCGCTTTGTTTCCACCAAATGTTCGAAGGCATGGGTCTCGGCGGTT 778
|||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 719 AAGGACTCGTCGCTGCGCTTTGCTTCCATCAAATGTTCGAAGGCATGGGTCTCGGCGGTT 778
Query 779 GCATCCTTCAGGCGGAGTACGGGTGGGTTAAAAAGGCGGTGATGGCTTTCTTTTTTGCGG 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GCATCCTTCAGGCGGAGTACGGGTGGGTTAAAAAGGCGGTGATGGCTTTCTTTTTTGCGG 838
Query 839 TGACGACGCCTTTTGGAGTGGCTCTAGGGATGGCATTATCTAAAACATACAAAGAGAATA 898
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 839 TGACGACGCCTTTTGGAGTGGTTCTAGGGATGGCACTATCTAAAACATACAAAGAGAATA 898
Query 899 GCCCTGATTCGCTTATAACAGTTGGGTTGCTCAACGCTTCCTCGGCTGGACTACTCATCT 958
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 899 GCCCTGAATCGCTTATAACAGTTGGGTTGCTCAACGCTTCCTCGGCAGGACTACTCATCT 958
Query 959 ACATGGCTTTAGTCGACCTTCTAGCTGCCGATTTTATGGGTCAAAAAATGCAGAAG-AGC 1017
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 959 ACATGGCTTTAGTTGACCTTCTAGCTGCCGATTTTATGGGTCAAAAAATGCA-AAGGAGC 1017
Query 1018 ATCAAGCTTCAATTAAAGTCATATGCCGCCGTATTGCTAGGTGCTGGTGGCATGTCCGTC 1077
|||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 1018 ATCAAGCTTCAATTAAAGTCATATGCTGCCGTTTTGCTTGGTGCTGGTGGCATGTCCGTC 1077
Query 1078 ATGGCCAAGTGGGCTTGA 1095
||||||||||||||||||
Sbjct 1078 ATGGCCAAGTGGGCTTGA 1095
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53664382605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5