BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg313968

Length=327
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G31175.1 | Symbols:  | unknown protein; Has 20 Blast hits to...   435    2e-121


> AT1G31175.1 | Symbols:  | unknown protein; Has 20 Blast hits 
to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:11140549-11142630 FORWARD 
LENGTH=1993
Length=1993

 Score =  435 bits (235),  Expect = 2e-121
 Identities = 253/262 (97%), Gaps = 0/262 (0%)
 Strand=Plus/Plus

Query  66   ATCTTGCGATCGGTTGCAGGAAGCGTTGTTGCAGTGCCACCGTCGGATGCCTGAGGGACC  125
            |||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||
Sbjct  96   ATCTTGCGATCGGTTGGAGGAAGCGTTGTTGCAGTGCCACCGTCGGATGCCGGAAGGACC  155

Query  126  GGCAAGGAGATCCGGTTGCAGACATTTGAACAAGGCGTTTGCGGAGTGCGTGGTGGCTGA  185
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  156  GGCAAGGAGATCCGGTTGCAGACATTTGAACAAGGCGTTTGCGGAGTGCGTGGTGGCGGA  215

Query  186  GGCTTGTCCGGAGGAATCAGAGGCGGTGAGGTCTCTTTGCTCTAGCGGCGGAACAAGCCT  245
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  216  GGCTTGTCCGGAGGAATCAGAGGCGGTGAGGTCTCTTTGCTCTAGCGGCGGAACAAGCCT  275

Query  246  TAAGCGTAAACAGTGCGAAGACGCTCAGCTTTCACTTTCTCTCTGTCTTTCTCGTCATCA  305
            ||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||
Sbjct  276  TAAGCGTAAACAGTGCGAATACGCTCAGCTTTCACTTTCTCTCTGTCTCTCTCGCCATCA  335

Query  306  GAGAGAATTTGAGCAGCGTTAG  327
            | |||| |||||||||||||||
Sbjct  336  GCGAGAGTTTGAGCAGCGTTAG  357



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15231127947


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5