BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg313975

Length=873
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G31530.1 | Symbols:  | DNAse I-like superfamily protein | ch...   279    2e-74


> AT1G31530.1 | Symbols:  | DNAse I-like superfamily protein | 
chr1:11281188-11282468 REVERSE LENGTH=852
Length=852

 Score =  279 bits (151),  Expect = 2e-74
 Identities = 194/215 (90%), Gaps = 2/215 (1%)
 Strand=Plus/Plus

Query  652  AGTGCGTATGGATTCACGAAAGGAGAGCCAAAGTTCACAAAAT-ATGTGCCAGGATTTGC  710
            |||| ||||| ||| |||||||||||||||| |||||| |||| |||||||||| |||||
Sbjct  637  AGTGTGTATGAATTTACGAAAGGAGAGCCAAGGTTCAC-AAATAATGTGCCAGGGTTTGC  695

Query  711  TGAAACACTCGATTACGTGTTCTTCACGCCTTCTGATTTTATTTCACCTGTGAAGCTCTT  770
            |||||||||||||||| |||||| ||||| ||||||  ||||||| |||||||||||| |
Sbjct  696  TGAAACACTCGATTACATGTTCTACACGCATTCTGAAATTATTTCTCCTGTGAAGCTCCT  755

Query  771  GGATTCACCCGACGTAGTCGATTTCTTACCTAATAAAAGTCATCCGAGTGATCATTTACC  830
            |||||| || |||| ||||||||||||||| ||| ||| |||||||||||||||||||||
Sbjct  756  GGATTCGCCGGACGAAGTCGATTTCTTACCCAATGAAATTCATCCGAGTGATCATTTACC  815

Query  831  CATCGGCGTTGAGTTTGAGATCAACCGAAAAATAT  865
            |||||||||||||||||||||||||||||| ||||
Sbjct  816  CATCGGCGTTGAGTTTGAGATCAACCGAAACATAT  850


 Score =  239 bits (129),  Expect = 4e-62
 Identities = 212/249 (85%), Gaps = 18/249 (7%)
 Strand=Plus/Plus

Query  1    ATGTATAGTTACTCTCCTCCAGA-TAGTATCCTGTGGGATAACCGTTCGAAGGCGATTCT  59
            |||||| | | |||||||||||| |  |||||||||||| || |||||||||||||||||
Sbjct  19   ATGTAT-G-T-CTCTCCTCCAGAGT-CTATCCTGTGGGAGAAACGTTCGAAGGCGATTCT  74

Query  60   TGATAATTTAAAGAATTTTGAAGCTGATTTCATCTGTCTACAGGAAGTAGACGAATAC-A  118
            ||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||| |
Sbjct  75   TGATAATATAAAGAATTTTGAAGCTGATTTCATCTGTCTACAAGAAGTAGACGAGTACCA  134

Query  119  TTAGtttttttGATAGAAACATGGAGGCTCATGGATACACTGGAATTTATTTTCCAAGAG  178
            | |||||||| |||||||||||||| ||||| |||||| ||||||||  | ||  || | 
Sbjct  135  T-AGTTTTTTCGATAGAAACATGGAAGCTCAAGGATACTCTGGAATTCCTATTGAAA-AT  192

Query  179  GA-GAAGGCTATAAAAGAGACGGCTGTGCAATCTTTTTCAAGCCCAAATTTGCAGAGTTG  237
             | |||||||||    || | | | |  ||||||||||||||||||||||||||||||| 
Sbjct  193  AAAGAAGGCTAT----GA-ATG-C-G--CAATCTTTTTCAAGCCCAAATTTGCAGAGTTC  243

Query  238  ATTACATAC  246
            |||||||||
Sbjct  244  ATTACATAC  252



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 42598556656


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5