BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg313993

Length=519
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G31320.1 | Symbols: LBD4 | LOB domain-containing protein 4 |...   843    0.0  


> AT1G31320.1 | Symbols: LBD4 | LOB domain-containing protein 4 
| chr1:11213017-11214382 FORWARD LENGTH=959
Length=959

 Score =  843 bits (456),  Expect = 0.0
 Identities = 499/520 (96%), Gaps = 2/520 (0%)
 Strand=Plus/Plus

Query  1    ATGAAAGAAAGTAGCCGGAAGCAAGGAGCTGCGTCACCGTGTGCTGCGTGTAAGCTTTTG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  91   ATGAAAGAAAGTAGCCGGAAGCAAGGAGCTGCGTCACCGTGTGCTGCGTGTAAGCTTTTG  150

Query  61   CGGCGGCGGTGCGCTCAAGATTGCGTTTTCTCGCCGTATTTTCCGGCGGATGAGCCTCAG  120
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  151  CGGCGGCGGTGCGCTCAAGATTGCGTTTTCTCGCCGTATTTTCCGGCCGATGAGCCTCAG  210

Query  121  AAATTCGCTAATGTTCATAGAGTGTTCGGTGCTAGCAACGTCAACAAGATGCTTCAGGAG  180
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  211  AAATTTGCTAATGTTCATAGAGTGTTCGGTGCTAGCAACGTCAACAAGATGCTTCAGGAA  270

Query  181  TTACCAATCCACCAGCGAGGGGACGCGGTGAGCAGCATGGTTTACGAGGCTAACGCAAGA  240
            |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct  271  TTACCAATCCACCAGCGAGGGGACGCTGTGAGCAGCATGGTTTACGAGGCTAATGCAAGA  330

Query  241  GTTCGGGATCCGGTTTACGGTTGCGTAGGTTCAATTTCGTCCCTCCAGCAACAAATCGAC  300
            || ||||||||||||||||||||||| ||  |||||||||||||||||||||| || || 
Sbjct  331  GTGCGGGATCCGGTTTACGGTTGCGTTGGGGCAATTTCGTCCCTCCAGCAACAGATAGAT  390

Query  301  GTGTTGCAAGCTCAGCTAGCTTTAGCTCAAGCTGAGGTGGTGCACCTACGTGTACGCCAC  360
            ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| 
Sbjct  391  GTGTTGCAAGCTCAGCTAGCTCTAGCTCAAGCTGAGGTGGTGCATCTACGTGTACGCCAG  450

Query  361  TCTACTAATTTTCC-GGGCCACGGACTATGCCCGGACAGTCCGAGTAGCAGCGGTTCACC  419
            || |||||||| || |||| |||||||||||||||| ||||||||||||||||| |||||
Sbjct  451  TCGACTAATTTCCCAGGGC-ACGGACTATGCCCGGATAGTCCGAGTAGCAGCGGGTCACC  509

Query  420  GTCTTCGAAGCAAGTGAGTCCACAGGACAACAAGGGCATGTTTAGCCATATGGACATTGT  479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  510  GTCTTCGAAGCAAGTGAGTCCACAGGACAACAAGGGCATGTTTAGCCATATGGACATTGT  569

Query  480  GGATGAAGCCAGTTTGGGAGAGTCTATGTGGTCTTGCTAG  519
            ||||||||||||||||||||||||||||||||||||||||
Sbjct  570  GGATGAAGCCAGTTTGGGAGAGTCTATGTGGTCTTGCTAG  609



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24815668618


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5