BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313994
Length=1239
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31310.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 1059 0.0
> AT1G31310.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr1:11198353-11200141 REVERSE LENGTH=1480
Length=1480
Score = 1059 bits (573), Expect = 0.0
Identities = 727/793 (92%), Gaps = 44/793 (6%)
Strand=Plus/Plus
Query 1 ATGGCTGACCAAAGTGGTGGGTTGGTTATGATGAGAGAGTACAGAAAAGGTAATTGGACT 60
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 117 ATGGCTGACCAAAGTGGTGGGTTGGTTATGATGAGAGAGTACAGAAAAGGCAACTGGACG 176
Query 61 TTGAATGAGACGATGGTGCTCATTGAGGCCAAGAAGATGGATGATGAGAGGCGGATGCGG 120
||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||
Sbjct 177 TTGAATGAGACGATGGTTCTCATTGAGGCCAAGAGGATGGATGATGAGAGGAGGATGCGG 236
Query 121 CGGTCCATCGG-CTTACCACCACCGGACCAGCAACAAGATAGCCGGAGTAATAGTAGTAG 179
||||||||||| ||| ||||| ||||| ||||||||||||| || | |
Sbjct 237 CGGTCCATCGGCCTT-CCACCGCCGGAGCAGCAACAAGATATCC------------G--G 281
Query 180 TAGTAATAAACCGGCGGAGCTACGGTGGAAGTGGATAGAAGATTACTGTTGGAGAAAAGG 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 -AGTAATAAACCGGCGGAGCTACGGTGGAAGTGGATAGAAGATTACTGTTGGAGAAAAGG 340
Query 240 TTGTATGAGAAGTCAGAATCAGTGCAATGACAAATGGGACAATCTCATGAGAGACTACAA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 TTGTATGAGAAGTCAGAATCAGTGCAATGACAAATGGGACAATCTCATGAGAGACTACAA 400
Query 300 AAAGGTTAGAGAGTACGAGAGACGAAGGGTAGAATCGTCTTTTACCGCCGCTGAGTCGTC 359
||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 401 AAAAGTTAGAGAGTACGAGAGACGAAGGGTAGAATCGTCTATTACCGCCGGTGAGTCGTC 460
Query 360 TTCATCTTCAGCTCCAGCTGGAGAAACGGCGTCGTATTGGAAGATGGAGAAGAGTGAGAG 419
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 461 TTCATCTTCAGCTCCAGCTGGAGAAACGGCGTCGTACTGGAAGATGGAGAAGAGTGAGAG 520
Query 420 GAAAGAGAGAAGCTTACCAAGTAATATGTTACCTCAAACATACCAAGCTTTGTTTGAAGT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 GAAAGAGAGAAGCTTACCAAGTAATATGTTACCTCAAACATACCAAGCTTTGTTTGAAGT 580
Query 480 GGTTGAGAGTAAAACGCTGCCTTCTTCCACCGCCGCAACCGCTGTAACCGCTGCAGTTGC 539
||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||
Sbjct 581 TGTTGAGAGTAAAACGCTTCCTTCTTCTACCGCCGTAACCGCTGTAACCGCTGCAGTTGC 640
Query 540 GGCTGCTA-T--T---A--A-TAGTGGAAACGGTTCAGGCGGTGGACAAATCCAAAAAGT 590
||||||| | | | | |||||||||||||||||||||||||||||||||||||||
Sbjct 641 GGCTGCTGCTGCTGCTATTAGTAGTGGAAACGGTTCAGGCGGTGGACAAATCCAAAAAGT 700
Query 591 GATACAACAAGGTTTAGGATTTGTTGTCCCTAAAGTACATCAAATCATTCAGCA--A-CC 647
||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||
Sbjct 701 GATACAACAAGGTTTAGGATTTGTTGTTCCTAAAGTACATCAAATCATTCAGCAGCAACC 760
Query 648 TGTTTTATTACCACTTCAGccaccaccgccaccaccaccaccaccGTCTCAGCCGTCACA 707
|||||| ||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 761 TGTTTTGTTACCACTTCAGCCACCGCCGCCACCACCACC------GTCTCAGCCGT---- 810
Query 708 GCCGTTACCACGACCACTACTGCTGCCACCGCCTCCACCGCCTTCTTTTCATGCTCAGCC 767
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 811 ----T-ACCACGACCACTACTACTGCCACCGCCTCCACCGCCTTCTTTTCATGCTCAGCC 865
Query 768 AATACTGCCCACA 780
|||||||||||||
Sbjct 866 AATACTGCCCACA 878
Score = 603 bits (326), Expect = 2e-171
Identities = 386/413 (93%), Gaps = 12/413 (3%)
Strand=Plus/Plus
Query 831 TAGTAGCTCATCAGATTCTGATACGAGTGAGTATTCAGACACATCTCCGGCGAAGAGAAG 890
|||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 884 TAGTAG--CA-CAGATTCTGATACAAGTGAGTATTCAGACACATCTCCGGCGAAGAGAAG 940
Query 891 GAGAACAATGCCG---ACCACAACCGCTGGTCCCAGCGGCGGCGGTGGCCTAGAAGCGGA 947
||||||||||||| ||||||||||| |||||||||||||||||| | |||| | |||
Sbjct 941 GAGAACAATGCCGACAACCACAACCGCCGGTCCCAGCGGCGGCGGT-G--TAGATGTGGA 997
Query 948 GGAGGTTGGACGTAGTAAGAGAGATGAAGAGACGACAGTAGCGGCTGCGTTATCAAGAAG 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 998 GGAGGTTGGACGTAGTAAGAGAGATGAAGAGACGACAGTAGCGGCTGCGTTATCAAGGAG 1057
Query 1008 TGTGTCAGTGATCGCAAATGCGATTAGGGAGAGTGAGGAGAGGCAAGATCGGAGACATAA 1067
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1058 TGTGTCAGTGATCGCAAACGCGATTAGGGAGAGTGAGGAGAGACAAGATCGGAGACATAA 1117
Query 1068 AGAAGTGATGAATGTACAAGAGAGGAGACTCAAGATCGAAGAATCTAATGTTGAGATGAA 1127
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1118 AGAAGTGATGAACGTACAAGAGAGGAGACTCAAGATCGAAGAATCTAATGTTGAGATGAA 1177
Query 1128 TAGAGAAGGCATGAATGGATTAGTGGAAGCCATTAACAAGCTAGCGAGCTCTATTTTCAC 1187
|||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| |
Sbjct 1178 TAGAGAAGGCATGAATGGATTAGTGGAAGCCATTAATAAGCTAGCTAGCTCCATTTTCGC 1237
Query 1188 TTTGGCTTCTTCT-C--GCCATAATAATCAGCATCAAGGAGGTCCATTACCAT 1237
| ||||||||||| | ||||||||||| ||||||||||||||||| ||||||
Sbjct 1238 TCTGGCTTCTTCTTCTCGCCATAATAATTAGCATCAAGGAGGTCCAGTACCAT 1290
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60893261085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5