BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg313994 Length=1239 Score E Sequences producing significant alignments: (Bits) Value AT1G31310.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 1059 0.0 > AT1G31310.1 | Symbols: | hydroxyproline-rich glycoprotein family protein | chr1:11198353-11200141 REVERSE LENGTH=1480 Length=1480 Score = 1059 bits (573), Expect = 0.0 Identities = 727/793 (92%), Gaps = 44/793 (6%) Strand=Plus/Plus Query 1 ATGGCTGACCAAAGTGGTGGGTTGGTTATGATGAGAGAGTACAGAAAAGGTAATTGGACT 60 |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 117 ATGGCTGACCAAAGTGGTGGGTTGGTTATGATGAGAGAGTACAGAAAAGGCAACTGGACG 176 Query 61 TTGAATGAGACGATGGTGCTCATTGAGGCCAAGAAGATGGATGATGAGAGGCGGATGCGG 120 ||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||| Sbjct 177 TTGAATGAGACGATGGTTCTCATTGAGGCCAAGAGGATGGATGATGAGAGGAGGATGCGG 236 Query 121 CGGTCCATCGG-CTTACCACCACCGGACCAGCAACAAGATAGCCGGAGTAATAGTAGTAG 179 ||||||||||| ||| ||||| ||||| ||||||||||||| || | | Sbjct 237 CGGTCCATCGGCCTT-CCACCGCCGGAGCAGCAACAAGATATCC------------G--G 281 Query 180 TAGTAATAAACCGGCGGAGCTACGGTGGAAGTGGATAGAAGATTACTGTTGGAGAAAAGG 239 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 282 -AGTAATAAACCGGCGGAGCTACGGTGGAAGTGGATAGAAGATTACTGTTGGAGAAAAGG 340 Query 240 TTGTATGAGAAGTCAGAATCAGTGCAATGACAAATGGGACAATCTCATGAGAGACTACAA 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 341 TTGTATGAGAAGTCAGAATCAGTGCAATGACAAATGGGACAATCTCATGAGAGACTACAA 400 Query 300 AAAGGTTAGAGAGTACGAGAGACGAAGGGTAGAATCGTCTTTTACCGCCGCTGAGTCGTC 359 ||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| Sbjct 401 AAAAGTTAGAGAGTACGAGAGACGAAGGGTAGAATCGTCTATTACCGCCGGTGAGTCGTC 460 Query 360 TTCATCTTCAGCTCCAGCTGGAGAAACGGCGTCGTATTGGAAGATGGAGAAGAGTGAGAG 419 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 461 TTCATCTTCAGCTCCAGCTGGAGAAACGGCGTCGTACTGGAAGATGGAGAAGAGTGAGAG 520 Query 420 GAAAGAGAGAAGCTTACCAAGTAATATGTTACCTCAAACATACCAAGCTTTGTTTGAAGT 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 521 GAAAGAGAGAAGCTTACCAAGTAATATGTTACCTCAAACATACCAAGCTTTGTTTGAAGT 580 Query 480 GGTTGAGAGTAAAACGCTGCCTTCTTCCACCGCCGCAACCGCTGTAACCGCTGCAGTTGC 539 ||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||| Sbjct 581 TGTTGAGAGTAAAACGCTTCCTTCTTCTACCGCCGTAACCGCTGTAACCGCTGCAGTTGC 640 Query 540 GGCTGCTA-T--T---A--A-TAGTGGAAACGGTTCAGGCGGTGGACAAATCCAAAAAGT 590 ||||||| | | | | ||||||||||||||||||||||||||||||||||||||| Sbjct 641 GGCTGCTGCTGCTGCTATTAGTAGTGGAAACGGTTCAGGCGGTGGACAAATCCAAAAAGT 700 Query 591 GATACAACAAGGTTTAGGATTTGTTGTCCCTAAAGTACATCAAATCATTCAGCA--A-CC 647 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| | || Sbjct 701 GATACAACAAGGTTTAGGATTTGTTGTTCCTAAAGTACATCAAATCATTCAGCAGCAACC 760 Query 648 TGTTTTATTACCACTTCAGccaccaccgccaccaccaccaccaccGTCTCAGCCGTCACA 707 |||||| ||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 761 TGTTTTGTTACCACTTCAGCCACCGCCGCCACCACCACC------GTCTCAGCCGT---- 810 Query 708 GCCGTTACCACGACCACTACTGCTGCCACCGCCTCCACCGCCTTCTTTTCATGCTCAGCC 767 | ||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 811 ----T-ACCACGACCACTACTACTGCCACCGCCTCCACCGCCTTCTTTTCATGCTCAGCC 865 Query 768 AATACTGCCCACA 780 ||||||||||||| Sbjct 866 AATACTGCCCACA 878 Score = 603 bits (326), Expect = 2e-171 Identities = 386/413 (93%), Gaps = 12/413 (3%) Strand=Plus/Plus Query 831 TAGTAGCTCATCAGATTCTGATACGAGTGAGTATTCAGACACATCTCCGGCGAAGAGAAG 890 |||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 884 TAGTAG--CA-CAGATTCTGATACAAGTGAGTATTCAGACACATCTCCGGCGAAGAGAAG 940 Query 891 GAGAACAATGCCG---ACCACAACCGCTGGTCCCAGCGGCGGCGGTGGCCTAGAAGCGGA 947 ||||||||||||| ||||||||||| |||||||||||||||||| | |||| | ||| Sbjct 941 GAGAACAATGCCGACAACCACAACCGCCGGTCCCAGCGGCGGCGGT-G--TAGATGTGGA 997 Query 948 GGAGGTTGGACGTAGTAAGAGAGATGAAGAGACGACAGTAGCGGCTGCGTTATCAAGAAG 1007 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 998 GGAGGTTGGACGTAGTAAGAGAGATGAAGAGACGACAGTAGCGGCTGCGTTATCAAGGAG 1057 Query 1008 TGTGTCAGTGATCGCAAATGCGATTAGGGAGAGTGAGGAGAGGCAAGATCGGAGACATAA 1067 |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 1058 TGTGTCAGTGATCGCAAACGCGATTAGGGAGAGTGAGGAGAGACAAGATCGGAGACATAA 1117 Query 1068 AGAAGTGATGAATGTACAAGAGAGGAGACTCAAGATCGAAGAATCTAATGTTGAGATGAA 1127 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1118 AGAAGTGATGAACGTACAAGAGAGGAGACTCAAGATCGAAGAATCTAATGTTGAGATGAA 1177 Query 1128 TAGAGAAGGCATGAATGGATTAGTGGAAGCCATTAACAAGCTAGCGAGCTCTATTTTCAC 1187 |||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| | Sbjct 1178 TAGAGAAGGCATGAATGGATTAGTGGAAGCCATTAATAAGCTAGCTAGCTCCATTTTCGC 1237 Query 1188 TTTGGCTTCTTCT-C--GCCATAATAATCAGCATCAAGGAGGTCCATTACCAT 1237 | ||||||||||| | ||||||||||| ||||||||||||||||| |||||| Sbjct 1238 TCTGGCTTCTTCTTCTCGCCATAATAATTAGCATCAAGGAGGTCCAGTACCAT 1290 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60893261085 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5