BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313998
Length=750
Score E
Sequences producing significant alignments: (Bits) Value
AT1G34770.1 | Symbols: | CONTAINS InterPro DOMAIN/s: MAGE prot... 702 0.0
> AT1G34770.1 | Symbols: | CONTAINS InterPro DOMAIN/s: MAGE protein
(InterPro:IPR002190); Has 1274 Blast hits to 1260 proteins
in 85 species: Archae - 0; Bacteria - 0; Metazoa - 1104;
Fungi - 45; Plants - 49; Viruses - 0; Other Eukaryotes - 76
(source: NCBI BLink). | chr1:12746486-12748614 FORWARD LENGTH=948
Length=948
Score = 702 bits (380), Expect = 0.0
Identities = 430/454 (95%), Gaps = 3/454 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGACGAAGAAGACCCTCTCTCTCAATTTGATATATCCAAAGAGGAAACGGATAAG 60
||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 70 ATGGCCGACGAAGAAGATTCTCTCTCTCAATTCGATATATCCAAAGAGGAAACGGATAAG 129
Query 61 TTAGTTTCAGAGGTGATTAGATTCATACTATTCAAGTTTCACCAAAGCTCAGGAACTCCA 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 130 TTAGTTTCAGAGGTGATTAGATTCATACTGTTCAAGTTTCACCAAAGCTCAGGAACTCCA 189
Query 121 ATTAAAAGAGAAGATTTGACTCAGATTGTTACTAAGAACTATCGGCAGCGTAATCTCGCC 180
|||||||||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 190 ATTAAAAGAGAAGATTTGACTCAGATTGTTACTAAGAACTATCGTCAACGAAATCTCGCT 249
Query 181 ACACACGTGATTAACGAAGCGAAGAAGAAGCTTTCTAATGTGTTTGGTTATGATTTGAAA 240
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 250 ACACACGTGATTAACGAAGCGAAGAAGAAGCTCTCTAATGTCTTTGGTTATGATTTGAAA 309
Query 241 GAGCTTCAACGTGCTCGGGCTTCTTCTAATGGTCAATCTAGTAGGCTTCCTCAGTCACAG 300
|| |||||||||||||| ||||||||| ||||||||| |||||||||||||||||||
Sbjct 310 GAACTTCAACGTGCTCGTTCTTCTTCTACTGGTCAATC---TAGGCTTCCTCAGTCACAG 366
Query 301 AGTTCTGTTGACTCGAAATCGTATGTGCTTGTTAGTGAATTGCCGTTGGAAGTGTTTAGG 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 367 AGTTCTGTTGACTCGAAATCGTATGTGCTTGTTAGTGAATTGCCGTTGGAAGTGTTTAAG 426
Query 361 AAACATGTTGTGGATGAAACTACGAGTCCTATGACTGGCTTCACGTTTGTGGTTCTTGCT 420
|||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||
Sbjct 427 AAACATGTTGTGGATGAAACCACGAGTCCTGTGACTGGCTTTACGTTTGTGGTTCTTGCC 486
Query 421 ATTGTGCAGCTTGCAGGAGGTAAAATCCCTGAAG 454
||||||||||||||||| ||||||||||||||||
Sbjct 487 ATTGTGCAGCTTGCAGGTGGTAAAATCCCTGAAG 520
Score = 420 bits (227), Expect = 1e-116
Identities = 251/263 (95%), Gaps = 0/263 (0%)
Strand=Plus/Plus
Query 488 AAACCCTTTGGCATCATTTGAAGCGAATGGGATTGCACGAAAGTGATGAGCATAATCCTG 547
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 521 AAACCCTTTGGCATCATTTGAAGCGAATGGGATTGCATGAAAATGATGAGCATAATCCTG 580
Query 548 TGTTTGGGAACAACAAGCAGACCCTGGAGACATTAGTCCAACAAAGGTACTTGCAGAAGG 607
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 581 TGTTTGGGAACAACAAGCAGACCCTGGAGACATTAGTCCAACAAAGGTTCTTGCAGAAGG 640
Query 608 AGAAAGTAAGTGGCCCAGAGGGTAATACTCTGTTTTACGATCTTGCTGAGAGAGCGTTAG 667
|||||||||||||||| ||||||| |||| |||||||||||||||| ||||||||| |||
Sbjct 641 AGAAAGTAAGTGGCCCTGAGGGTAGTACTTTGTTTTACGATCTTGCAGAGAGAGCGCTAG 700
Query 668 ATCCACAAGTTAGCGAGAAAGTAAAAGATTACATTTCTCAGATCCTGAAGAATGATGTAG 727
|||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 701 ATCCTCAAGTTAGCGAGAAAGTAAAAGATTACATTTCACAGATCCTTAAGAATGATGTAG 760
Query 728 CAGTTGTAGAGCTTGATGATTAG 750
|||||||||||||| ||||||||
Sbjct 761 CAGTTGTAGAGCTTAATGATTAG 783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36419756575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5