BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg314007

Length=732
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G02870.1 | Symbols:  | Ribosomal protein L4/L1 family | chr5...   132    6e-30
  AT2G24730.1 | Symbols:  | 60S ribosomal protein L4/L1 (RPL4C), ...   119    4e-26


> AT5G02870.1 | Symbols:  | Ribosomal protein L4/L1 family | chr5:657786-659733 
FORWARD LENGTH=1475
Length=1475

 Score =  132 bits (71),  Expect = 6e-30
 Identities = 151/187 (81%), Gaps = 15/187 (8%)
 Strand=Plus/Plus

Query  242  TTCGTTCTGGTAAAGGTAAAATGAGGAATCGTCGTTACATTTTTAGGAAAGGTCCA-TTG  300
            ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||  |||
Sbjct  628  TTCGTCCTGGTAAAGGTAAAATGAGGAATCGTCGTTACATTTCTAGGAAAGGTCCTCTTG  687

Query  301  ATTGT-TTATGGAACTAAAGGATC---G-TTAGTGGAAGCTTTTAGGAA-CATTACAGG-  353
             |||| || ||||||| ||||| |   | || ||| ||||||||||||| | || | || 
Sbjct  688  -TTGTGTT-TGGAACTGAAGGAGCCAAGATT-GTGAAAGCTTTTAGGAATC-TTCCTGGT  743

Query  354  GATTGATATATGTAATGTAGAGAGA-TTGAGTCTATTGAAGTTAGCTCCTGGTGGTCATC  412
            | ||||  | ||| | || |||||  || | | | ||||| ||||| ||||||||||| |
Sbjct  744  G-TTGAGCTTTGTCACGTTGAGAGGCTTAACT-TGTTGAAATTAGCCCCTGGTGGTCACC  801

Query  413  TTGGTAG  419
            |||||||
Sbjct  802  TTGGTAG  808


> AT2G24730.1 | Symbols:  | 60S ribosomal protein L4/L1 (RPL4C), 
pseudogene,  blastp match of 68% identity and 7.9e-28 P-value 
to SP|Q9XF97|RL4_PRUAR 60S ribosomal protein L4 (L1). (Apricot) 
{Prunus armeniaca} | chr2:10526349-10527025 REVERSE 
LENGTH=677
Length=677

 Score =  119 bits (64),  Expect = 4e-26
 Identities = 103/121 (85%), Gaps = 6/121 (5%)
 Strand=Plus/Plus

Query  526  GATGTGAAAAGAGGTGTGATT-ATGAAGAATCCT-TTGAAGAATTTGAATGTGATGGTT-  582
            |||||||| || | |||| || | |||||||||| || ||||||||||||||||| ||| 
Sbjct  70   GATGTGAAGAGTGCTGTG-TTGAAGAAGAATCCTCTT-AAGAATTTGAATGTGAT-GTTG  126

Query  583  AAGCTTAGTCATTACGCTAAGACCGCGAAGATGATGTCTTTGTTGGCTGAAGCTCAGAGA  642
            |||||||  | ||| |||||||| | || || ||||||||||||||||||||||||||||
Sbjct  127  AAGCTTAACCCTTATGCTAAGACTGTGAGGAGGATGTCTTTGTTGGCTGAAGCTCAGAGA  186

Query  643  G  643
            |
Sbjct  187  G  187



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35515541929


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5