BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314017
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
AT1G35410.1 | Symbols: | Protein of unknown function (DUF1184)... 370 6e-102
AT1G35400.1 | Symbols: | Protein of unknown function (DUF1184)... 335 2e-91
AT1G35365.1 | Symbols: | Protein of unknown function (DUF1184)... 152 2e-36
AT3G27900.1 | Symbols: | Protein of unknown function (DUF1184)... 130 1e-29
> AT1G35410.1 | Symbols: | Protein of unknown function (DUF1184)
| chr1:13024161-13024941 FORWARD LENGTH=450
Length=450
Score = 370 bits (200), Expect = 6e-102
Identities = 228/241 (95%), Gaps = 3/241 (1%)
Strand=Plus/Plus
Query 174 TTTTGAATACTACATCCAAGAGCTTAAGAAGCTAGAAGAGAAGTTGAGGTCTGCCAAGGA 233
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 213 TTTTGAATACTACAACCAAGAGCTTAAGAAGCTAGAAGAGAAGTTGAGGTCTGCCAAGGA 272
Query 234 ATTTTCAGAGGCCAATGGGTTTGTGAGGGAAGAGATAAAGTCTAACATTGTTCACTTGTG 293
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 273 ATTTTCAGAGGCAAATGGGTTTGTGAGGGAAGAGATAAAGTCTAACATTCTTCACTTGTG 332
Query 294 GAAGTCTCTCTTTGAAGCAACACCGGAAGTGATAAACCCTAATAAGCCTATACTTCTTGA 353
|||||||||||||||||||||||| ||||||| |||| |||||||| ||||| |||||||
Sbjct 333 GAAGTCTCTCTTTGAAGCAACACCAGAAGTGAGAAACTCTAATAAGACTATAGTTCTTGA 392
Query 354 GCTGTTTAGGCCTATCGAGAACGAAGTTTGCTGTCGTCGTCTTGCTTCTTTACTCATATG 413
||||||||| |||||||| ||||||||||||||||||| | | |||||||||||||||||
Sbjct 393 GCTGTTTAGTCCTATCGATAACGAAGTTTGCTGTCGTC-T-T-GCTTCTTTACTCATATG 449
Query 414 A 414
|
Sbjct 450 A 450
Score = 165 bits (89), Expect = 3e-40
Identities = 112/123 (91%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 45 GAGATTACCACAA-ACTGATCTCAACAAGGAGAAGGAGAAGCAGAAAGAAGAGACTATAC 103
||| || ||| || |||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 15 GAG-TTGCCAAAAGACTGATCTCAACAAGGAGAAGGAGAATCAGAAAGAAGAGGCTATAC 73
Query 104 GACTCGGAGTTGAGCTCTCGCTCTTTGTGGCTGAAGCAATGTTCATATTATCTGATGACC 163
||| ||||||| |||||||||||||||||||||||||||||||| | ||||||||| |||
Sbjct 74 GACCCGGAGTTAAGCTCTCGCTCTTTGTGGCTGAAGCAATGTTCCTCTTATCTGATAACC 133
Query 164 TAC 166
|||
Sbjct 134 TAC 136
> AT1G35400.1 | Symbols: | Protein of unknown function (DUF1184)
| chr1:13018289-13019198 FORWARD LENGTH=621
Length=621
Score = 335 bits (181), Expect = 2e-91
Identities = 224/244 (92%), Gaps = 6/244 (2%)
Strand=Plus/Plus
Query 174 TTTTGAATACTACATCCAAGAGCTTAAGAAGCTAGAAGAGAAGTTGAGGTCTGCCAAGGA 233
|||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 234 TTTTGAATACTACAACCAAGAGATGAAGAAGCTAGAAGAGAAGTTGAGGTCTGCCAAGGA 293
Query 234 ATTTTCAGAGGCCAATGGGTTTGTGAGGGAAGAGATAAAGTCTAACATTGTTCACTTGTG 293
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 294 GTTTTCAGAGGCAAATGGGTTTGTGAGGGAAGAGATAAAGTCTAACATTCTTCACTTGTG 353
Query 294 GAAGTCTCTCTTTGAAGCAACACCGGAAGTGAT-AAACCCTAATAAGCCTATACT-TCTT 351
||||||||||||||||||||||||||||||||| ||||| |||||||| |||||| | ||
Sbjct 354 GAAGTCTCTCTTTGAAGCAACACCGGAAGTGATGAAACC-TAATAAGCTTATACTAT-TT 411
Query 352 GAGCTGTTTAGGCCTATCGAGAACGAAGTT-TGCTGTCGTCGTCTTGCTTCTTTACTCAT 410
||| |||||| ||||||| || ||||| | | |||||||| ||||||||||||||||||
Sbjct 412 GAGATGTTTATGCCTATCCAGGTCGAAGATCT-CTGTCGTCATCTTGCTTCTTTACTCAT 470
Query 411 ATGA 414
||||
Sbjct 471 ATGA 474
Score = 171 bits (92), Expect = 6e-42
Identities = 143/166 (86%), Gaps = 9/166 (5%)
Strand=Plus/Plus
Query 1 ATGGAATCGATGTCAATGACTGACCGTGTTGTCCGTAACAACAAGAGATTACCACAAACT 60
|||||||| ||||| |||||||||||| |||||||||||||| | | | | |||
Sbjct 1 ATGGAATCAATGTCTATGACTGACCGTATTGTCCGTAACAAC---A-A--A--A-GGACT 51
Query 61 GATCTCAACAAGGAGAAGGAGAAGCAGAAAGAAGAGACTATACGACTCGGAGTTGAGCTC 120
||||||||||||| |||||||| |||||||||||| ||||||||| ||||||| |||||
Sbjct 52 AATCTCAACAAGGAAAAGGAGAATCAGAAAGAAGAGGCTATACGACCCGGAGTTAAGCTC 111
Query 121 TCGCTCTTTGTGGCTGAAGCAATGTTCATATTATCTGATGACCTAC 166
||||||||||||||||||||||||||| | ||||||||| ||||||
Sbjct 112 TCGCTCTTTGTGGCTGAAGCAATGTTCCTCTTATCTGATAACCTAC 157
> AT1G35365.1 | Symbols: | Protein of unknown function (DUF1184)
| chr1:12991392-12992145 FORWARD LENGTH=540
Length=540
Score = 152 bits (82), Expect = 2e-36
Identities = 90/94 (96%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 79 GAGAAGCAGAAAGAAGAGACTATACGACTCGGAGTTGAGCTCTCGCTCTTTGTGGCTGAA 138
|||||||||||||| ||| ||||||||||||||||||||||||| |||||| ||||||||
Sbjct 133 GAGAAGCAGAAAGAGGAGGCTATACGACTCGGAGTTGAGCTCTCACTCTTTATGGCTGAA 192
Query 139 GCAATGTTCATATTATCTGATGACCTACGTTCTA 172
||||||||||||||||||||||||||||||||||
Sbjct 193 GCAATGTTCATATTATCTGATGACCTACGTTCTA 226
Score = 87.9 bits (47), Expect = 7e-17
Identities = 53/56 (95%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 1 ATGGAATCGATGTCAATGACTGACCGTGTTGTCCGTAACAACAAGAGATTACCACA 56
|||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGAATCAATGTCAACGACTGACCGCGTTGTCCGTAACAACAAGAGATTACCACA 56
> AT3G27900.1 | Symbols: | Protein of unknown function (DUF1184)
| chr3:10352905-10353639 REVERSE LENGTH=735
Length=735
Score = 130 bits (70), Expect = 1e-29
Identities = 90/100 (90%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 73 GAGAAGGAGAAGCAGAAAGAAGAGACTATACGACTCGGAGTTGAGCTCTCGCTCTTTGTG 132
|||||||||| ||||||||| ||| |||||||| | ||||||||||||||||||||||||
Sbjct 109 GAGAAGGAGATGCAGAAAGATGAGGCTATACGATTGGGAGTTGAGCTCTCGCTCTTTGTG 168
Query 133 GCTGAAGCAATGTTCATATTATCTGATGACCTACGTTCTA 172
|||||| ||||| || |||||||||| ||||||||||||
Sbjct 169 GCTGAAACAATGGTCTTATTATCTGACAACCTACGTTCTA 208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19604422110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5