BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314020
Length=255
Score E
Sequences producing significant alignments: (Bits) Value
AT1G35435.1 | Symbols: | Putative membrane lipoprotein | chr1:... 279 6e-75
> AT1G35435.1 | Symbols: | Putative membrane lipoprotein | chr1:13032806-13033247
REVERSE LENGTH=249
Length=249
Score = 279 bits (151), Expect = 6e-75
Identities = 218/250 (87%), Gaps = 6/250 (2%)
Strand=Plus/Plus
Query 1 ATGGTTTTGTCAAAATTTCAACTTGCAACCCTTCTCATCACATATTCTCTCCTATTTACT 60
|||| ||||||||| |||||||| | | | ||||| ||||||||| ||||||||||| ||
Sbjct 1 ATGGCTTTGTCAAAGTTTCAACTAGTAGCTCTTCTAATCACATATACTCTCCTATTTTCT 60
Query 61 TGCCAATCAAAAGTACTGAAAAGAATTCAAATCGGACCTGA-CGAGTGTGTTTATAGAGG 119
|||||||||||| || |||||||||| ||| | |||||| | |||||||||||| |||||
Sbjct 61 TGCCAATCAAAAATAGTGAAAAGAATGCAAGTTGGACCT-AGCGAGTGTGTTTACAGAGG 119
Query 120 TCGGTGCCGA-TTCAGCTACGAATGTAGGAGTCGATGTGGACCGCCTGAGTTCCCAAATG 178
|||||||||| | ||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 120 TCGGTGCCGAGAT-AGCTACGAATGTAGGAGTCGATGTGGACCGCCTGAGTTCTCACATG 178
Query 179 AAATTATTGGTTTATGCATGTTTGATTATAATGATCTT-GAATATTTTTGTTGTTGTACC 237
||| | |||||||||||||||| |||||| ||||| | |||||||||||||||||||||
Sbjct 179 AAACTCTTGGTTTATGCATGTTCGATTATGATGAT-TACGAATATTTTTGTTGTTGTACC 237
Query 238 TCATATAACT 247
|| || |||
Sbjct 238 ACAAATTACT 247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11611850019
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5