BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314037
Length=462
Score E
Sequences producing significant alignments: (Bits) Value
AT1G36340.1 | Symbols: UBC31 | ubiquitin-conjugating enzyme 31 ... 326 1e-88
AT1G35700.1 | Symbols: | pseudogene, putative ubiquitin-conjug... 191 6e-48
> AT1G36340.1 | Symbols: UBC31 | ubiquitin-conjugating enzyme 31
| chr1:13683663-13684952 REVERSE LENGTH=621
Length=621
Score = 326 bits (176), Expect = 1e-88
Identities = 359/443 (81%), Gaps = 29/443 (7%)
Strand=Plus/Plus
Query 24 GCAGCGAATTGCGAAAGAATTCAGGGAC-ATGACCTCCCCAGCTTCTTTGTACAGTATTG 82
|||| ||||||||| |||| ||| | | |||| ||| || ||||||| ||||||||
Sbjct 58 GCAGAGAATTGCGATGGAATACAGAG-CTATGATCTCGAAAGAATCTTTGTTCAGTATTG 116
Query 83 GTAGAGACGACTCAAACAATGTATTCAAATGGCA-AGCGA-TGATTCAAGGACCCCAAGG 140
|| | | |||| |||||| ||| | ||||| | || | |||| | || || | ||
Sbjct 117 GT-CA-A-AACTCGAACAATATATACGAATGG-ACTGC-AGTGATCCGGGGTCCAGATGG 171
Query 141 TACTCCTTATGCCGGTGGCATGTTT-AGCATCGA-CATTGAGTTTCCTGA-AGATTATCC 197
||||| |||| |||||||||||| | | || | ||| |||||||| | ||||||||
Sbjct 172 CACTCCCTATGAAGGTGGCATGTTTAATC-TC-AGTATTAAGTTTCCT-ACGGATTATCC 228
Query 198 TTTTAAACCACCCAAGTTTACATTCAAAACTCCGATTTACCATCCAAATATCAATTCCA- 256
||||||||||||||||||||| || ||||||||||||||||||||||||||||| | |
Sbjct 229 TTTTAAACCACCCAAGTTTACGTTTAAAACTCCGATTTACCATCCAAATATCAA-T-GAT 286
Query 257 G-AGGATCGATTTGTCTTG-ACATTCTTAAAGACAAGTGGACTCCTTCTCTCACT-GTTG 313
| |||||||||||| | || |||||||||||||||| ||||||||| |||| | | ||||
Sbjct 287 GAAGGATCGATTTG-CATGAACATTCTTAAAGACAAATGGACTCCTGCTCTTA-TGGTTG 344
Query 314 AAAAGGTGC-TCTTGTCCATAAC-TGCACTGTTGGCGGATCCAAACCCAGATGATCCTCT 371
||||||||| || |||| || || | ||| |||| | ||||||||||||||||||||
Sbjct 345 AAAAGGTGCTTC-TGTCAAT-ACTTTTACTATTGGAAAAACCAAACCCAGATGATCCTCT 402
Query 372 TGTACCTGAAATTGGAGAACT-TTACAAGAATAACAGATTCCAATTTGACCAGAGAGCTC 430
|||||||||||||||| | || || |||||||||||||||||||||||||||||||||||
Sbjct 403 TGTACCTGAAATTGGACAGCTCTT-CAAGAATAACAGATTCCAATTTGACCAGAGAGCTC 461
Query 431 GGGAATTCACCGAGCGACATGCT 453
| |||||||| | |||||||||
Sbjct 462 GAGAATTCACTGCTCGACATGCT 484
> AT1G35700.1 | Symbols: | pseudogene, putative ubiquitin-conjugating
enzyme, similar to ubiquitin-conjugating enzyme GB:CAB40394
GI:4583656 from (Guillardia theta); blastp match of
61% identity and 1.6e-34 P-value to GP|12580660|emb|CAC26977.1||AJ010592
ubiquitin conjugating enzyme {Guillardia theta}
| chr1:13216616-13217251 FORWARD LENGTH=636
Length=636
Score = 191 bits (103), Expect = 6e-48
Identities = 125/136 (92%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 319 GTGCTCTTGTCCATAACTGCACTGTTGGCGGATCCAAACCCAGATGATCCTCTTGTACCT 378
||||| || |||||||||| | | |||||||||||||||||| |||||||||||||||||
Sbjct 499 GTGCTTTTATCCATAACTGTATTATTGGCGGATCCAAACCCAAATGATCCTCTTGTACCT 558
Query 379 GAAATTGGAGAACTTTACAAGAATAACAGATTCCAATTTGACCAGAGAGCTCGGGAATTC 438
||||||||| |||||| |||||||||||||||||| ||||| |||||||||||||||||
Sbjct 559 GAAATTGGACAACTTTTCAAGAATAACAGATTCCAGTTTGATTAGAGAGCTCGGGAATTC 618
Query 439 ACCGAGCGACATGCTT 454
||||||||||||||||
Sbjct 619 ACCGAGCGACATGCTT 634
Score = 167 bits (90), Expect = 9e-41
Identities = 101/106 (95%), Gaps = 2/106 (2%)
Strand=Plus/Plus
Query 216 TACATTCAAAACTCCGATTTACCATCCAAATATCAATTCCAGAGGATCGATTTGTC-TTG 274
||||||||||||||||||||||||| |||||||||| ||||| ||||||||||| | |||
Sbjct 278 TACATTCAAAACTCCGATTTACCATTCAAATATCAAGTCCAGCGGATCGATTTG-CATTG 336
Query 275 ACATTCTTAAAGACAAGTGGACTCCTTCTCTCACTGTTGAAAAGGT 320
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 ACATTCTTAAAGACAAGTGGACTCCTTCTCTCACTGTTGAAAAGGT 382
Score = 158 bits (85), Expect = 6e-38
Identities = 119/135 (88%), Gaps = 4/135 (3%)
Strand=Plus/Plus
Query 85 AGA-GACGACTCAAACAATGTATTCAAATGGCAAGCGATGATTCAAGGACCCCAA-GGTA 142
||| |||||||||||||||||||||||||| || | ||||||||||| ||||| ||||
Sbjct 68 AGACGACGACTCAAACAATGTATTCAAATGAAAAACAATGATTCAAGG-TCCCAACGGTA 126
Query 143 CTCCTTATGCCGGTGGCATGTTTAGCATCGACATTGAGTTTCCTGAAGATTATCCTTTTA 202
|||| || ||| |||| || ||| || |||||||||||||||||||||||||||||||||
Sbjct 127 CTCCCTACGCCAGTGGTATATTTCGCCTCGACATTGAGTTTCCTGAAGATTATCCTTTTA 186
Query 203 AACCACCCAAG-TTT 216
||||||||||| |||
Sbjct 187 AACCACCCAAGGTTT 201
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22017274062
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5