BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314047
Length=1200
Score E
Sequences producing significant alignments: (Bits) Value
AT1G36070.1 | Symbols: | Transducin/WD40 repeat-like superfami... 1908 0.0
AT1G78070.1 | Symbols: | Transducin/WD40 repeat-like superfami... 448 8e-125
> AT1G36070.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:13466911-13470899 REVERSE LENGTH=1908
Length=1908
Score = 1908 bits (1033), Expect = 0.0
Identities = 1148/1204 (95%), Gaps = 5/1204 (0%)
Strand=Plus/Plus
Query 1 ATGGAGACTGATACATCAGCTCAAGAGGCAAGAAATGGTAAAGACATTCAAGGGATTCAG 60
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 453 ATGGAGACTGATACATCAGCTCAAGAGGCAAGGAATGGTAAAGACATACAAGGGATTCAG 512
Query 61 TGGGAAGGGTTTAAGTATACTAGAGACGAGTTTCGTGAGACTAGGTTGAAACAATATGAG 120
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 513 TGGGAAGGGTTTAAGTATAATAGAGACGAGTTTCGTGAGACTAGGTTGAAACAATATGAT 572
Query 121 AACTTTGTCAATATCTTAACGCCTAGCTCTCGGGAAAAGCTCGATAAGGAACATCGGC-A 179
|||||||| |||||||||| |||||||||||| |||||||| |||||||||||| ||| |
Sbjct 573 AACTTTGTTAATATCTTAAGGCCTAGCTCTCGAGAAAAGCTTGATAAGGAACATGGGCAA 632
Query 180 --AGTTGAGAAAGGAAAGAACTTTTATGACTTCCAGTTCAATACAAGGCTTGTCACATCC 237
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 633 GTAGTTGAGAAAGGAAAGAACTTTTATGACTTCCAATTCAATACAAGGCTTGTCACTTCC 692
Query 238 ACTATTGTGCATTTTCAGCTTCGGAATTTGGTATGGGCGACATCAAAGCATGATGTATAT 297
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 693 ACTATTGTGCATTTTCAGCTTCGGAATTTGGTATGGGCGACATCTAAGCATGATGTATAT 752
Query 298 CTAATGCAAAATTATTCACTCATGTACTGGTCATCTCTTCTACAGAGAGGGAAAGAAGTA 357
|||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||
Sbjct 753 CTAATGCAAAATTATTCACTCATGCACTGGTCATCTCTACTCCAGAGAGGGAAAGAAGTA 812
Query 358 ATGAATGTCGCCAGATCAGTTACCCCCACTCAGAAACTACCTGGATTGTTTTCTGAGCCA 417
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 CTTAATGTCGCCAGATCAGTTACCCCCACTCAGAAACTACCTGGATTGTTTTCTGAGCCA 872
Query 418 CTCTCCAGGGTGCAAGTTAGCAGCATGGCAGTCAAAGAAAATCTGATCCTGTTAGGAGGG 477
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 873 CTCTCTAGGGTGCAAGTTAGCAGCATGGCAGTCAAAGAAAATCTGATCCTTTTAGGAGGG 932
Query 478 TTCAACGGGGAGCTTCTCTGCAAGTGTGTAAACCAGCCTGGGGTTGCTTTTTGCACAAGA 537
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 933 TTCGACGGGGAGCTTCTCTGCAAGTGTGTAAATCAGCCTGGGGTTGCTTTTTGCACAAGA 992
Query 538 TTGTCAACAGAAGATAATGCCATCACAAACACAGTTGATATATACCGAAG-CCCAAGTGG 596
|| ||||| |||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 993 TTATCAACGGAAGATAATGCCATCACAAACACAGTTGATATATACCG-AGACCCAAGTGG 1051
Query 597 CTCCCTTAGGCTTATAACCGCAAATAACGACTGTAAAATTCGGGTATTCGATGCTCAGAG 656
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1052 CTCCCTTAGGCTTATAACCGCAAATAACGACTGTAAAATTCGTGTATTCGATGCTCAGAG 1111
Query 657 CTTTACACGTGTCAGTGAATTTGCTTTCGATTGGTCTGTCAATAATACCTCAGTTAGCCC 716
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1112 CTTTACACGTGTCAGTGAATTTGCTTTAGATTGGTCTGTCAATAATACCTCAGTTAGCCC 1171
Query 717 AGATGGAAAGCTACTCGCTGTACTCGGGGATAGTACAGAATGCTTGATCTCTGATTCCCA 776
||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1172 GGATGGGAAGCTACTCGCTGTAGTCGGGGACAGTACAGAATGCTTGATCTCTGATTCCCA 1231
Query 777 TTCTGGAAAAGTTATTTCAACCCTCAAAGGCCACAAAGACTACTCGTTTGCATCTGCTTG 836
|||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||
Sbjct 1232 TTCTGGAAAAGTTATTTCAAGCCTCAGAGGCCACAAAGACTACTCATTTGCATCTGCTTG 1291
Query 837 GCACCCGAATGGTCTAATCTTAGCAACTGGAAACCAAGACACGACATGCCGTCTCTGGGA 896
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1292 GCACCCGAATGGTCTAATCTTAGCAACGGGAAACCAAGACACGGCATGCCGTCTCTGGGA 1351
Query 897 CATTCGGAACCCATCAGAATCATTCGCCATCCTGAAAGGAAACATGGGAGCCATCAGAGG 956
|||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1352 CATTCGTAACCCGTCAGAATCATTCGCTGTCCTGAAAGGAAACATGGGAGCCATCAGAGG 1411
Query 957 ACTGAAGTTCACACCAGAAGGACGGTTTCTTGCCATGGCTGAGCCTGCAGACTTTGTTCA 1016
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1412 ACTGAAGTTCACACCAGAAGGGCGGTTTCTTGCAATGGCTGAGCCTGCAGACTTTGTTCA 1471
Query 1017 CATCTTCGACACGCAGTCCGGGTTTCTACAGTCCCAAGAGATTGATCTGTTTGGAGAAAT 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1472 CATCTTCGACACGCAGTCCGGGTTTCTACAGTCCCAAGAGATTGATCTGTTTGGAGAAAT 1531
Query 1077 AGCTGGGATCTCATTTAGCCCCGACACAGAGGCACTATATGTTGGGATCGCAGACCGCAC 1136
||| |||||||| || |||||||| ||||||||||||||||| ||| |||||||||||||
Sbjct 1532 AGCCGGGATCTCGTTCAGCCCCGATACAGAGGCACTATATGTAGGGGTCGCAGACCGCAC 1591
Query 1137 CTATGGAAGCTTGATGGAGTATAAGAGGAGAAAAGATAATCACTATATGGACTCCTTTTT 1196
|||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1592 TTATGGAAGTTTGCTGGAGTATAAGAGGAGAAAGGATAATCACTATATGGACTCCTTTTA 1651
Query 1197 CTGA 1200
||||
Sbjct 1652 CTGA 1655
> AT1G78070.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:29355022-29358993 FORWARD LENGTH=2077
Length=2077
Score = 448 bits (242), Expect = 8e-125
Identities = 896/1200 (75%), Gaps = 92/1200 (8%)
Strand=Plus/Plus
Query 9 TGATACATCAGC-TCAAGAGGCAAGAAATGGTAAAGACATTCAAGGGATT-CAGTGGGAA 66
||| |||||||| | ||| || || ||||| ||||| |||||||||||| || |||| |
Sbjct 267 TGAAACATCAGCGT-TAGAAGCTAGGAATGGAAAAGATATTCAAGGGATTCCA-TGGG-A 323
Query 67 G-GGTTTAAGTATACTAGAGACGAG-TTTCGTGAGACTAGGTTGAAACAATATGAGAACT 124
| | || || || || || || || | ||||||| ||| ||| || ||| | ||||
Sbjct 324 GAGCTTGAATTACACGAGGGA-TAGATACCGTGAGAATAGATTGCTGCACTATAAAAACT 382
Query 125 TTGTCAATATCTTAACGCCTAGCTCTC-GGGAAAAGCTCGATAAGGAACAT-C-GGCAAG 181
||| | | | || || | || | | ||| |||| ||||||| | || | |||||
Sbjct 383 TTGAGAGTCTGTT-TCG---A--TC-CAGAGAAGAGCTTGATAAGG-A-ATGCTTGCAAG 433
Query 182 TTGAGAAAGGAAAGAACTTTTATGACTTCCAGTTCAATACAAGGCTTGTCACA-TCCACT 240
| |||||||||||||||||||||||||| |||||||||||||||||||||| | |||||
Sbjct 434 TAGAGAAAGGAAAGAACTTTTATGACTTTCAGTTCAATACAAGGCTTGTCA-AGTCCACA 492
Query 241 ATTGTGCATTTTCAGCTTCGGAATTTGGTATGGGCGACATCAAAGCATGATGTATATCTA 300
|| | |||||||||||| |||| ||||||||||| ||||||||||| ||||| ||| |
Sbjct 493 ATAGCGCATTTTCAGCTGAGGAACTTGGTATGGGCAACATCAAAGCACGATGTGTATTTC 552
Query 301 ATGCAA-AATTATTCACTCATGTACTGGTCATCTCTT-CTACAGAGAGGG-AAAGAAGTA 357
||| || || || || |||||| ||||||||||| || | || || ||| |||||||||
Sbjct 553 ATG-AACAACTACTCTCTCATGCACTGGTCATCT-TTGTTGCAAAG-GGGCAAAGAAGTA 609
Query 358 ATGAATGTCGC-CAGATCA--GTTACCCCCACTCAGAAACTA-CCTGGATTGTTTTCTGA 413
| ||||| || || || ||| || || | ||| | | | ||||| ||| || |
Sbjct 610 CTTAATGTGGCAAAGCCCATTGTT-CCTTCAAT--GAAGC-AGCATGGATCGTTGTCACA 665
Query 414 GCCACTCTCCAGGGTGCAAG-TTAGCAGCATGGCAGTCAAAGAAAATCTGATCCTGTT-- 470
| | | || || || | || | |||| ||||||||| ||||| || |||| |||
Sbjct 666 GTCTGTATCAAGAGT-CCAGATAAGCACCATGGCAGTTAAAGACGATTTGAT--AGTTGC 722
Query 471 AGGAGGGTT-CAACGGGGAGCTTCTCTGCAAGTGTGTAAACCAGCCTGGGGTTGCTTTTT 529
|||||||| ||| || |||||| |||| ||| | ||| | |||| ||||||||| |
Sbjct 723 GGGAGGGTTCCAA-GGAGAGCTTATCTGTAAGAAAATCAACGAACCTGAGGTTGCTTTCT 781
Query 530 GCAC-AAGATTGTCAACAGAAGATAATGCCATCACAAACACAGTTGATATATACCGAA-G 587
|||| || | | || ||| ||||| | |||||| || | ||||| || || | || |
Sbjct 782 GCACTAA-ACTAACATCAGCTGATAACGACATCACCAATTCGGTTGACATCTA-C-AACG 838
Query 588 C-CCAAGTGGCTCCCTT-AGGCTTATAACCGCAAATAACGACTGTAAAATTCGGGTATTC 645
| || ||||||| | || ||| |||| ||||| || || ||||||| | ||| ||||
Sbjct 839 CACCTAGTGGCT-CGTTAAGGGTTATGACCGCGAACAATGACTGTACTGTCCGGCTATTT 897
Query 646 GATG-CTCAGAGCTTTACACGTG-TC-AGTGAATTTG-CTTTCGATTGGTCTGTCAATAA 701
|||| | || | |||| | | || || | | ||||| ||||| | |||||||| |||||
Sbjct 898 GATGCCACA-AACTTTGC-CTTGCTCAACAG-ATTTGCCTTTC-ACTGGTCTGTAAATAA 953
Query 702 TACCT-CAGTTAGCCCAGATGGAAAGCTACTCGCTGTACTCGGGGATAGTACAGAATGCT 760
| || || || |||||||| |||||| | ||||| || || || ||| | || ||||
Sbjct 954 CATCTCCA-CCAGTCCAGATGGTAAGCTAGTGGCTGTTCTAGGAGACAGTCCTGAGTGCT 1012
Query 761 TGATCT--CTGATTCC-CATTCTGGAAAAGTTATTTCAAC--CCTCAAAGGCCA-CAAAG 814
| | || | ||| || | ||||||||||| | || || ||| ||||||| | |
Sbjct 1013 T-A-CTAGCAGATACCGGA-TCTGGAAAAGTGA--TCCACGGACTCGAAGGCCATC-TCG 1066
Query 815 ACTACTCGTTTGCATCTGCTTGGCACCCGAATGGTCTAATCTTAGCAACTGGAAACCAAG 874
||||||||||| |||| || |||||||| || |||| ||||||||| || || |||||||
Sbjct 1067 ACTACTCGTTTTCATCAGCATGGCACCCAAACGGTCAAATCTTAGCCACGGGTAACCAAG 1126
Query 875 ACACGACATGCCGTCTCTGGGACATTCGGAACCCATCAGAATCATTCGCCA-TCCTGAAA 933
|||| || || | || |||||| | |||||| || ||||| || | || |||||
Sbjct 1127 ACACAACCTGTAGACTATGGGACGTAAGGAACCTGTCTCAATCACTC-AAAGTCTTGAAA 1185
Query 934 GGAAACATGGGAGCCATCAGAGGAC-TGAAGTTCACACCAGAAGGACGGTTTCTT-GCCA 991
|||||||||||||| |||||| | | ||| |||||| | || |||||| ||||| ||||
Sbjct 1186 GGAAACATGGGAGCTATCAGA-GCCTTGAGGTTCACGTCTGATGGACGG-TTCTTAGCCA 1243
Query 992 TGGCTGAGCCTGCAGACTTTGTTCACATCTTCGACAC-GCAGTCCGGGTTTCTA--CAGT 1048
|||||||||| || |||||||| ||| | || ||||| | || | |||| | | ||||
Sbjct 1244 TGGCTGAGCCAGCGGACTTTGTACACTTGTTTGACACGGAAG--CTGGTTAC-AGTCAGT 1300
Query 1049 CCCAAGAGATTGATCTGTTTGGAGAAATAGCTGGGA-TCTCATTTAGCCCCGACACAGAG 1107
||||||||||||||||||||||||||||| |||| |||| |||||||||||||| |||
Sbjct 1301 GTCAAGAGATTGATCTGTTTGGAGAAATAGC-GGGAATCTCGTTTAGCCCCGACACGGAG 1359
Query 1108 GCACTATAT-GTTGGGA-TCGCAGACCGCACCTATGGAAGCTTGATGGAGTATAAGAGGA 1165
||||| | | || |||| | || || || || || || |||||| |||||| ||| ||||
Sbjct 1360 GCACTGT-TCGT-GGGAGTAGCTGATCGTACGTACGGCAGCTTGTTGGAGTTTAACAGGA 1417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58935439830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5