BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314052
Length=1326
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27470.1 | Symbols: | seryl-tRNA synthetase / serine--tRNA ... 981 0.0
AT1G36220.1 | Symbols: | pseudogene, seryl-tRNA synthetase, si... 248 1e-64
> AT5G27470.1 | Symbols: | seryl-tRNA synthetase / serine--tRNA
ligase | chr5:9695008-9697389 FORWARD LENGTH=1670
Length=1670
Score = 981 bits (531), Expect = 0.0
Identities = 1062/1310 (81%), Gaps = 69/1310 (5%)
Strand=Plus/Plus
Query 28 AATCCGGAGATCATCCGAGAGA-CTCAACGCCGGAAATTTGCCAGCGTCGAAGTTGTTGA 86
||||||||||| |||||||| | | |||||||||| |||||||||||| ||| | || ||
Sbjct 119 AATCCGGAGATTATCCGAGA-ATCGCAACGCCGGAGATTTGCCAGCGTTGAAATCGTCGA 177
Query 87 GGAGATAATCATTCTCGACCAA-GTATGGCGTCAACGTAAATATGAA-TATGATTG-TGC 143
||||| || | || || ||| | ||||||||| ||| ||| |||| | |||| | |
Sbjct 178 TGAGATCATTAAGCTGGA-CAAGGAATGGCGTCAGCGTCAATTTGAAGT-TGATAGCT-T 234
Query 144 CCGAAAAGACTTCAATAAGATTAACAAGGAAGTGGC-CAAGCTCAAAATTTCTGATGCTG 202
| |||| || ||||| ||| | || ||| ||||||| | ||||||||||| | | |
Sbjct 235 CAGAAAGGAGTTCAACAAGCTCAATAAGCAAGTGGCGC-AGCTCAAAATTAAAAAAGAAG 293
Query 203 ATGCGACTGAGAAGATTCAGCAAGCAGAGATTATCAAACAAGAATGTAC--CAAGTATGA 260
|||||| ||||| ||||| ||| | |||| | ||||||||| | ||| ||| | ||
Sbjct 294 ATGCGAGTGAGATTATTCAACAAACTGAGAAAAACAAACAAGATTCTACTGCAA--AGGA 351
Query 261 GGCGGAAGTTCGTGAAGCTTATGCTGCTTTGGAAGCTAAATTGTGGA-CAA-TGGGAAAT 318
||| ||||||||||||||||||||||||||| |||| || | |||| ||| | || |||
Sbjct 352 GGCTGAAGTTCGTGAAGCTTATGCTGCTTTGAAAGC-CAAGT-TGGAGCAAGTTGGTAAT 409
Query 319 CTCATCCATGACTCGGTTCCAATTAG-TAACGACGAGGCAAATAATCTCT-TGGTTAAAG 376
| ||||||| || |||||| || | ||| |||||||| |||||||| | || |||||
Sbjct 410 TTGGTCCATGATTCTGTTCCAGTT-GATAAGGACGAGGCTAATAATCT-TGTGATTAAAC 467
Query 377 TTTCGGGTGAACCGCGGGTTGCTTCACCTGGTCAGGAGCT-AACAAACCATATGGATCTC 435
| | ||||||| |||| || || | ||||||| | |||| || ||||||| |||||||
Sbjct 468 TGTGGGGTGAAAAGCGGTTTTCTACGCCTGGTCTGAAGCTGAA-AAACCATGTGGATCTT 526
Query 436 GTTGAGTTTCTCGATATTGTAGATACCAAGAGAGGTGCT-AAAGTTGCCGGAGGAAGAGG 494
|||||| |||||| ||||| ||||||||| ||||||||| ||| | || |||| ||||||
Sbjct 527 GTTGAGCTTCTCGGTATTGCAGATACCAAAAGAGGTGCTGAAA-TCGCTGGAGCAAGAGG 585
Query 495 CTATTTTC-TAAAAGGATATGGCGTGCTCCTTAACCAAGCTCTTATCAACTATT-CTTTA 552
|| ||||| | |||||| |||| || | |||||||||||||||||||||| || |||
Sbjct 586 CT-TTTTCTTGAAAGGAGATGGTTTGATGCTTAACCAAGCTCTTATCAACT-TTGGGTTA 643
Query 553 GCCTTCTT-ACAAAAGAAAGAATTCTCA-GTTATACAACCTAAC-TGTCTCATGACGAAG 609
| ||||| | |||||| || |||| || | | | |||||| | | | |||||| ||||
Sbjct 644 ACTTTCTTGA-AAAAGAGAGGATTCACAGGAT-TGCAACCT-CCTTTTTTCATGAGGAAG 700
Query 610 GAAT-CCATGGCCAAGTGCGCACAATTGTCACAGTTTGATGAAGAACTCTACAAGGTGAC 668
| || ||||||||||||||||||||| ||||||| |||||||| || |||||||||||
Sbjct 701 G-ATGTTATGGCCAAGTGCGCACAATTGGCACAGTTCGATGAAGAGCTTTACAAGGTGAC 759
Query 669 TGGTGAAGGAAAGGGAAATGATGAAAAATTCCTTATTGCAACTGCTGAGCAACCTCTTTG 728
|||| | || || | ||||| |||| ||| ||||||||||||||||| ||||||||
Sbjct 760 TGGT----G-AA-GG--A-GATGACAAATACCTCATTGCAACTGCTGAGCAGCCTCTTTG 810
Query 729 TGCACAACATCA-AGGTGAATGG-TTCCATCCGACCGAGCTTCCCATAAGATATGCTGGT 786
||| | ||| | | ||||||| || |||||||| ||||||||| ||||||||||||||
Sbjct 811 TGCGTACCAT-ATTGATGAATGGATT-CATCCGACTGAGCTTCCCCTAAGATATGCTGGT 868
Query 787 TACTCGA-CCTGCTTTAGAAAAGAAGCTGGTTCCCACGGAAGAGATACTCTTGGCATTTT 845
||||| | ||||||||||||||||||| ||||| || |||||||| || ||||| |||||
Sbjct 869 TACTC-ATCCTGCTTTAGAAAAGAAGCCGGTTCACATGGAAGAGACACCCTTGGTATTTT 927
Query 846 CCGTGTTCACCAGTTTGAGAAAGTCGAACAGTTTTGCATCACGGGTCCT-----G-ATGA 899
|||||||||||||||||||||| | ||||||||||||||||| || ||| | |||
Sbjct 928 CCGTGTTCACCAGTTTGAGAAAATTGAACAGTTTTGCATCACCGGCCCTAACGAGAATGC 987
Query 900 TTCGTGGGAAATGCTTGAAGAGATGCTGAAGAACTCGGAAGAGTTTTACCAATCGCTTAA 959
|||||||||||||| || |||||| |||||||||| ||||| ||||||||| ||| |||
Sbjct 988 CTCGTGGGAAATGCTCGATGAGATGATGAAGAACTCTGAAGATTTTTACCAAGCGC-TAA 1046
Query 960 AA-TTCCATACCGAGTCGTGTCAG-TTGTCTCTGGAGCTTTGAACGATGCAGCTGCAAAA 1017
|| ||||||||| | |||| || | | ||||||||||| ||||| ||||||||||| |||
Sbjct 1047 AACTTCCATACCAAATCGTCTC-GATCGTCTCTGGAGCATTGAATGATGCAGCTGCGAAA 1105
Query 1018 AAGTATGACTTGGAAGGATGGTTTCCTGCGTCAGGGAC-TTACAGAGAGCTCGTGTCCTG 1076
||||| || ||||||| ||||||||| |||| | ||| || ||| ||||| ||||| ||
Sbjct 1106 AAGTACGATTTGGAAGCTTGGTTTCCTTCGTCCGAGACATT-CAGGGAGCTTGTGTCTTG 1164
Query 1077 TTCCAACTGTACAGACTATCAGTCTCGAAGACTTAACATTAGATATGGTTACAAAAAGAG 1136
|||||||||||||||||| ||| |||| || ||| | || ||||| ||| | ||||||||
Sbjct 1165 TTCCAACTGTACAGACTACCAGGCTCGCAGGCTTGAGATCAGATACGGTCAGAAAAAGAG 1224
Query 1137 CAATCAGGAGACGAGGAAGTATGTGCATATGCTGAATTCGACTCTTTGC-GCGACACAGA 1195
|||| || |||| | | ||||||||||||||||||||||||| | || | || ||| |||
Sbjct 1225 CAATGAGCAGACAAAGCAGTATGTGCATATGCTGAATTCGACAC-TTACTGCAACAGAGA 1283
Query 1196 GGACCATTTGCTGCATTCTCGAGAACTACCAGCGAGATGATGGTGTGGACATCCCTGAGG 1255
||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||
Sbjct 1284 GGACCATTTGCTGCATTCTCGAGAACTACCAGCGAGAGGATGGTGTCGACATTCCTGAGG 1343
Query 1256 TTCTGCAACC-TTTCATGGCCGGAGTGAAGTTTTTGCCTTTCAAGACCAA 1304
||||||| || ||| |||| ||||| || |||||||||||||||| ||||
Sbjct 1344 TTCTGCAGCCGTTT-ATGGGCGGAGAGACGTTTTTGCCTTTCAAGGCCAA 1392
> AT1G36220.1 | Symbols: | pseudogene, seryl-tRNA synthetase,
similar to GI:3319776 from (Zea mays); blastp match of 70% identity
and 1.6e-30 P-value to SP|O81983|SYS_HELAN Seryl-tRNA
synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS). (Common
sunflower) {Helianthus annuus} | chr1:13601056-13601579
REVERSE LENGTH=524
Length=524
Score = 248 bits (134), Expect = 1e-64
Identities = 229/273 (84%), Gaps = 13/273 (5%)
Strand=Plus/Plus
Query 683 GAA-ATGATGAAAAATTCCTTATTGCAACTGCTGAGCAACCTCTTTGTGCACAACATCAA 741
||| |||| || |||| ||||||||||||||| ||| |||||||||||||| | ||||||
Sbjct 251 GAAGATGACGAGAAATACCTTATTGCAACTGCAGAGAAACCTCTTTGTGCATACCATCAA 310
Query 742 GGTGAATGGTTCCATCCGACCGAGCTTCCCATAAGATATGCTGGTTACTCGACCTGCTTT 801
| ||||||| |||| |||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 311 GATGAATGGATCCAACCGACCGAGCTTCCCATAAGATATGCTGCTTACTCGACCTGCTAT 370
Query 802 AGAAAAGAAGCTGGTTCCCACGGAAGAGATACTCTTGGCATTTTCCGTGTTCACCAGTTT 861
||||||||||| | |||||| | |||||||||||||| |||||||| |||||
Sbjct 371 AGAAAAGAAGCA--T------GGAAGACA--CTCTTGGCATTTTCTGTGTTCACTAGTTT 420
Query 862 GAGAAAGTCGAACAGTTTTGCATCACGGGTCCTGATGATTCGTGGGAAATGCTTGAAGA- 920
|| ||| | ||||| ||||||||||| ||||||||||| ||||| ||||| || ||
Sbjct 421 GATAAACTTGAACAATTTTGCATCACTATTCCTGATGATTTGTGGGTAATGCGCGA-GAA 479
Query 921 GATGCTGAAGAACTCGGAAGAGTTTTACCAATC 953
|||| | ||||||||| |||| |||||||||||
Sbjct 480 GATGATAAAGAACTCGCAAGAATTTTACCAATC 512
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65260708500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5