BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314056
Length=465
Score E
Sequences producing significant alignments: (Bits) Value
AT1G36340.1 | Symbols: UBC31 | ubiquitin-conjugating enzyme 31 ... 571 2e-162
AT1G35700.1 | Symbols: | pseudogene, putative ubiquitin-conjug... 117 1e-25
> AT1G36340.1 | Symbols: UBC31 | ubiquitin-conjugating enzyme 31
| chr1:13683663-13684952 REVERSE LENGTH=621
Length=621
Score = 571 bits (309), Expect = 2e-162
Identities = 419/471 (89%), Gaps = 12/471 (3%)
Strand=Plus/Plus
Query 1 ATGTTTAAGAAAATGGATAAAAAAGCAACGCAGAGAATTGAGAAGGAATACAAAGCTATG 60
||||||||||||||||||||||||||| |||||||||||| || |||||||| |||||||
Sbjct 29 ATGTTTAAGAAAATGGATAAAAAAGCAGCGCAGAGAATTGCGATGGAATACAGAGCTATG 88
Query 61 ATCTCGAATGACTCTTTGTACAGTATTGGTCGAGACTCGAACGATATATACAAATGGAAA 120
|||||||| || ||||||| ||||||||||| | |||||||| |||||||| ||||||
Sbjct 89 ATCTCGAAAGAATCTTTGTTCAGTATTGGTCAAAACTCGAACAATATATACGAATGGACT 148
Query 121 ACAATGATCCATGGTCCACG-TGGTACTCCCTATGAAGGTGGCATATTTAA-CATCGA-T 177
|| |||||| |||||| | ||| |||||||||||||||||||| ||||| | || | |
Sbjct 149 GCAGTGATCCGGGGTCCA-GATGGCACTCCCTATGAAGGTGGCATGTTTAATC-TC-AGT 205
Query 178 ATTAAGTTTCCTACAGATTATCCTTTTAAACCACCCAAGTTTACGTTCAGAACTCCGATT 237
|||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 206 ATTAAGTTTCCTACGGATTATCCTTTTAAACCACCCAAGTTTACGTTTAAAACTCCGATT 265
Query 238 TACCATCCAAATATCAATGATGAAGGGTCAATTTGCCTTGA-CATTCTTAAAGACAAGTG 296
|||||||||||||||||||||||||| || |||||| | || ||||||||||||||| ||
Sbjct 266 TACCATCCAAATATCAATGATGAAGGATCGATTTGCAT-GAACATTCTTAAAGACAAATG 324
Query 297 GACTCCTACTCTTACGGTTGAAAAGGTGCT-CTTGTCCATAACGTT-ACTATTGGAGGAT 354
||||||| |||||| ||||||||||||||| || ||| ||| | || ||||||||| |
Sbjct 325 GACTCCTGCTCTTATGGTTGAAAAGGTGCTTCT-GTCAATA-CTTTTACTATTGGAAAAA 382
Query 355 CCAAACCCAGATGATCCTCTTGTACCTGATATTGGACAACTCTTCAAGAATAACCGATTC 414
||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||
Sbjct 383 CCAAACCCAGATGATCCTCTTGTACCTGAAATTGGACAGCTCTTCAAGAATAACAGATTC 442
Query 415 CTATTTGACCAGAGAGCCCGAGAATTCACTGCACGACATGCTAATGATTAA 465
| ||||||||||||||| |||||||||||||| |||||||||||| |||||
Sbjct 443 CAATTTGACCAGAGAGCTCGAGAATTCACTGCTCGACATGCTAATAATTAA 493
> AT1G35700.1 | Symbols: | pseudogene, putative ubiquitin-conjugating
enzyme, similar to ubiquitin-conjugating enzyme GB:CAB40394
GI:4583656 from (Guillardia theta); blastp match of
61% identity and 1.6e-34 P-value to GP|12580660|emb|CAC26977.1||AJ010592
ubiquitin conjugating enzyme {Guillardia theta}
| chr1:13216616-13217251 FORWARD LENGTH=636
Length=636
Score = 117 bits (63), Expect = 1e-25
Identities = 93/107 (87%), Gaps = 4/107 (4%)
Strand=Plus/Plus
Query 219 TACGTTCAGAACTCCGATTTACCATCCAAATATCAATGATGAAG-GG-TCAATTTGCCTT 276
||| |||| |||||||||||||||| |||||||||| | | || || || |||||| ||
Sbjct 278 TACATTCAAAACTCCGATTTACCATTCAAATATCAA-G-TCCAGCGGATCGATTTGCATT 335
Query 277 GACATTCTTAAAGACAAGTGGACTCCTACTCTTACGGTTGAAAAGGT 323
||||||||||||||||||||||||||| |||| || |||||||||||
Sbjct 336 GACATTCTTAAAGACAAGTGGACTCCTTCTCTCACTGTTGAAAAGGT 382
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22103024680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5