BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314057
Length=252
Score E
Sequences producing significant alignments: (Bits) Value
AT1G36380.1 | Symbols: | unknown protein; LOCATED IN: endomemb... 363 6e-100
> AT1G36380.1 | Symbols: | unknown protein; LOCATED IN: endomembrane
system; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 15 growth stages; Has 14 Blast hits to 14 proteins in
6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink). | chr1:13700814-13701632 FORWARD LENGTH=644
Length=644
Score = 363 bits (196), Expect = 6e-100
Identities = 230/246 (93%), Gaps = 3/246 (1%)
Strand=Plus/Plus
Query 6 ATCTCCTTCGTTCCTCGACAA--TC-TCTTCTTCTTCCTCATACGTCCGCTTCTTGCGAT 62
||||||||||||||| ||||| || |||||||||||||||||||||||||||| |||||
Sbjct 112 ATCTCCTTCGTTCCTTGACAATCTCTTCTTCTTCTTCCTCATACGTCCGCTTCTGGCGAT 171
Query 63 CTCATTCGTCGTCTGCTTCATCGCTCTATGGTGGTTTCTGGCATGGAAGCTTGTATTAAG 122
|||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 172 CTCATTCGTCATCTGCTTCATCGCTCTTTGGTGGTTTCTAGCATGGAAGCTTGTATTAAG 231
Query 123 CCATGTTCCTCTAGTACAAGAGATCTTTGGCTTGAGGaaaaaaaCCTTTAAACCAAAACC 182
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 232 CCATGTTCCTCTAGTACAAGAGATCTTTGGCTTGAGGAAGAAAACCTTTATACCAAAACC 291
Query 183 CGAATCTCGCGGTCGAATCGCCAAGTTTTACAGAAGTATCAGTTCTCAGAATTCTGTTCC 242
|||||||| |||||||||||||| || |||| ||||||||||||||||||| |||||||
Sbjct 292 TGAATCTCGTGGTCGAATCGCCAAATTCTACAAAAGTATCAGTTCTCAGAATCCTGTTCC 351
Query 243 CCAATG 248
||||||
Sbjct 352 CCAATG 357
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11461046772
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5