BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg314063

Length=408
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G36980.1 | Symbols:  | unknown protein; CONTAINS InterPro DO...   680    0.0  


> AT1G36980.1 | Symbols:  | unknown protein; CONTAINS InterPro 
DOMAIN/s: Uncharacterised protein family UPF0220 (InterPro:IPR007919); 
Has 424 Blast hits to 424 proteins in 159 species: 
Archae - 0; Bacteria - 0; Metazoa - 228; Fungi - 120; Plants 
- 62; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). 
| chr1:14025028-14026941 FORWARD LENGTH=678
Length=678

 Score =  680 bits (368),  Expect = 0.0
 Identities = 394/407 (97%), Gaps = 0/407 (0%)
 Strand=Plus/Plus

Query  1    ATGGATTTGGCAGAATTGTGGGCGATTTTCGGACCCGGATTCTCCGGCGCCGTTTTCGGA  60
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  57   ATGGATTTGGCAGAACTGTGGGCGATTTTCGGACCCGGATTCTCCGGCGCCGTTTTCGGA  116

Query  61   ACCGGGTGGTGGTTTTGGGTCGACGCCGTCGTGTGCAGTTCCATCCAAGTTCCTTTCGTC  120
            |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct  117  ACCGGGTGGTGGTTTTGGGTCGACGCCGTCGTTTGCAGTTCCATCCAAGTTCCCTTCGTC  176

Query  121  CATTACCTTCCCGGCATATTCGCATCTCTCGGAGCTTTGATGTTCAATTGCGTGAGAAAA  180
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct  177  CATTACCTTCCCGGCATATTCGCTTCTCTCGGAGCTTTGATGTTCAATTGCGTCAGAAAA  236

Query  181  GAGGATATTGATTACTCTCCTTACGACGAAGGCGAATGGAGATTGAAGCTATGGCTTTTC  240
            || || ||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct  237  GAAGACATTGATTACTCTCCTTACGACGAAGGCGAGTGGAGATTGAAGCTGTGGCTTTTC  296

Query  241  ATAGCGTATGTCGTAGCATTTGTTTCCTTAGCTGCTTCTGTTGGCTTGCTGATTCAAGAT  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  ATAGCGTATGTCGTAGCATTTGTTTCCTTAGCTGCTTCTGTTGGCTTGCTGATTCAAGAT  356

Query  301  TCGGTTGTGAAGACTGGGCCTTCGACTTGGACTGGTGTGGCTGGTGTTTTTCAATGCGTG  360
            ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| || 
Sbjct  357  TCGGTTGTGAAGACTGGGCCTTCAACTTGGACTGGTGTGGCTGGTGTCTTTCAATGTGTA  416

Query  361  TTTGTATTGATAAGTGGGCTAATGTATTGGACATCGCACTCAGAGTA  407
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  417  TTTGTATTGATAAGTGGGCTAATGTATTGGACATCGCACTCAGAGTA  463



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19302815616


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5