BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314088
Length=1350
Score E
Sequences producing significant alignments: (Bits) Value
AT1G43020.1 | Symbols: | Protein of unknown function, DUF547 |... 1520 0.0
> AT1G43020.1 | Symbols: | Protein of unknown function, DUF547
| chr1:16155403-16157911 FORWARD LENGTH=1490
Length=1490
Score = 1520 bits (823), Expect = 0.0
Identities = 1178/1345 (88%), Gaps = 42/1345 (3%)
Strand=Plus/Plus
Query 7 TCGAAGAATTATCGATATTCAtcttcttctt-tttcttcttcttcatcttcttctCAGCT 65
|||||||| ||||||||||| || ||||||| ||| ||||||||||||||||||||||||
Sbjct 21 TCGAAGAAATATCGATATTCTTCATCTTCTTCTTT-TTCTTCTTCATCTTCTTCTCAGCT 79
Query 66 AAGTACTCCAAGAGCATTTCAAAATGGGCCA-TCTCAAGCCATTGATAAATCTCCTCTCT 124
|||||||||||||||||| ||||||||| | ||||||||||||| |||||||||||| |
Sbjct 80 AAGTACTCCAAGAGCATTGCAAAATGGG-TATTCTCAAGCCATTGCTAAATCTCCTCTTT 138
Query 125 GGGATGTTG-AGAAGGTGAAGTGCAGCTTTAGTTCCTCAGTGTATAAGTCGAACGAAGAA 183
||||||||| || ||||||| |||||||||||||||||||||| ||||| ||||||||||
Sbjct 139 GGGATGTTGAAG-AGGTGAAATGCAGCTTTAGTTCCTCAGTGTCTAAGTGGAACGAAGAA 197
Query 184 CTTATTGGAGAGATCGCGGAGCTTGACACAGAGATCTTACTTTTAGAGCGGTATCTTCTC 243
|||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||
Sbjct 198 CTTATTGGAGAGATCGCGGAACTTGACACCGAGATCTTACAGTTAGAGCGGTATCTTCTC 257
Query 244 TCGCTATACAGATCATCTTTCGGAGATCATTTGCCTGCATCATTGTCACTAGATAATTCT 303
|||||||||||||||||||| |||| | | ||| ||| | || |||||||||
Sbjct 258 TCGCTATACAGATCATCTTTTGGAG---A------T-CAT--TTG-C-CT-GATAATTCT 302
Query 304 CCACTCCCTCCATACAAGACCAAATTTTACAATGACCGGGCGTCTTCTGAGTCTGATAAG 363
|||||||||||| || |||||||||| ||||||||| ||| ||||||| |||||||||
Sbjct 303 TCACTCCCTCCATGCACGACCAAATTTCACAATGACCAGGCCTCTTCTGTTTCTGATAAG 362
Query 364 TCTGTCTTGTCTA-GCTTCAAGTCA-TTGTCTGAGATGGACAAGATAAAAAGATCCGACT 421
||||||||||| | || |||| || || ||| | | ||||||||||||| |||| ||||
Sbjct 363 TCTGTCTTGTCCAGGC-TCAA-ACAGTTCTCTAAAACGGACAAGATAAAAGGATCTGACT 420
Query 422 CTGGTCACCCGAGTTTGGCTGATCTTCTTGGTCTTAACACTCTCAGTCCC-AATAAACTC 480
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 421 CTGGTCACCCGAGTTTGGCTGATCTTCTTGGTCTTAACACTCTCAG-CCCTAATAAACTC 479
Query 481 TCGGAAGAGATTCTGAGAAGTATTTGTGTGGTACACTACAAACTCTCAGACAAGCAGGGA 540
|| ||||||||||||||||||||||||||| |||||||||||||||||||||| || |
Sbjct 480 TCTGAAGAGATTCTGAGAAGTATTTGTGTGATACACTACAAACTCTCAGACAAT--GG-A 536
Query 541 CATAGCAGAATAGTCAAGAAGAACTCAAAGAATGAAAA-TATTAATGAGGAACTTGGAGT 599
|||| |||| | |||||||| ||||||||||||| | ||| |||||||||||||
Sbjct 537 CATAACAGATTGGTCAAGAA---CTCAAAGAATGAAGAGTATGGGC-AGGAACTTGGAGT 592
Query 600 TGTTATCGGTAAACTTTGCCTAGAAGATGACAATTTGAAGTCGGTAGAGAGCTTGCTTCA 659
|| |||| ||| || | |||||| ||| ||||||| ||||| ||||||||| |||||||
Sbjct 593 TGGTATCCATAAGCTATACCTAGACGATTACAATTTAAAGTCCGTAGAGAGCATGCTTCA 652
Query 660 GAATTTTAGATCGTTGGTTCAAAAGCTCGAGAAAGTTGATCCCGAAAGGAT-GGCTAGGG 718
|||||||||||| || |||||||||||||||||||||||||| | |||| | || | |||
Sbjct 653 GAATTTTAGATCATTAGTTCAAAAGCTCGAGAAAGTTGATCCGGCAAGGCTCGG-TCGGG 711
Query 719 AAGAGAAACTTGCGTTCTGGATAAACATTCATAATGCTTTAGTGATGCACGCGTATATAG 778
||||||| |||||||||||||| ||||| ||||||||||| |||||||||| |||||||
Sbjct 712 AAGAGAAGCTTGCGTTCTGGATCAACATACATAATGCTTTGGTGATGCACGAATATATAG 771
Query 779 TATATGGATTTAGTGAAGATACAACAAGCACA--AC-GA-TCTTGAAGGCAGCATTTAAC 834
|||||||| || |||||||||||||||||||| | || | ||||||||||||||||||
Sbjct 772 TATATGGAATTGGTGAAGATACAACAAGCACATTAATGAAT-TTGAAGGCAGCATTTAAC 830
Query 835 ATCGGTGGGGAGCGGATAAACGCATACGATGTCCAGAGTTCGATATTGGGCATTCATGCA 894
|| ||||||||| || |||| ||||||||| |||||||||||||||||||||||| | ||
Sbjct 831 ATAGGTGGGGAGTGGGTAAATGCATACGATATCCAGAGTTCGATATTGGGCATTCGTCCA 890
Query 895 TGCCATTCACCATCACGTTTATGGACGTTATTTTCACCGGCTAGGAGTTCAAAGACAAGT 954
||||||||||||||||||||| ||||| | ||||||||||||| ||||||||||||||||
Sbjct 891 TGCCATTCACCATCACGTTTACGGACGCTGTTTTCACCGGCTAAGAGTTCAAAGACAAGT 950
Query 955 AGCGGTCGACACACTTATTCGTTGGATTATGCCGAACCACTTCTTCATTTTGCCCTCTCT 1014
|| ||| |||||||||| ||||||| |||||||| |||||||||||||||||||||||
Sbjct 951 AGTGGTAGACACACTTACGCGTTGGACTATGCCGAGCCACTTCTTCATTTTGCCCTCTCG 1010
Query 1015 ACAGGAGCATCAACCGATCCAATGGTCCGAGTTTATACAGCAGAAGGAATCTTTCAAGAA 1074
|| |||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||
Sbjct 1011 ACCGGAGCATCAACCGATCCAATGGTCAGAGTGTATACATCAGAAGGAATCTTTCAAGAA 1070
Query 1075 CTTAGGCAAGCAAGAGACAGTTTCATCCAAACAAGTGTTCGATTTGAGAAAGAGACAAAG 1134
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 1071 CTTAGGCAAGCAAGAGACAGTTACATCCAAACAAGTGTTGGATTTGAGAAAGAGACAAAG 1130
Query 1135 ATTCTATTGCCAAAGATCATTTACAACTACGCAAAGGATACTTCTCTCGACATGGCTGAA 1194
||| ||||||||||||||||||||||||| || |||||||||||||| ||||||| ||||
Sbjct 1131 ATTTTATTGCCAAAGATCATTTACAACTATGCGAAGGATACTTCTCTTGACATGGGTGAA 1190
Query 1195 CTCTTTAATACCATATCAGAGTGCCTAACAGAGACACAAAGAACGACACTGACACGAGTT 1254
||||||| |||| | || ||||| ||| ||| ||||||||||| || ||| | || ||
Sbjct 1191 CTCTTTAGTACCGTGTCTGAGTGTTTAATGGAGTCACAAAGAACGGCAATGAGAAGAATT 1250
Query 1255 GTAAAGAAAAAACAAGACAGATACATTCGTTGGATTAACCATGACTCCAACTTCCGTTAT 1314
|| || ||||| ||||| |||| |||||||||| || || |||| ||||| |||||||||
Sbjct 1251 GTGAACAAAAAGCAAGAGAGATGCATTCGTTGGGTTCACGATGAATCCAAGTTCCGTTAT 1310
Query 1315 ATCATCTATCCGGAACTCGTGAGAG 1339
||||| || ||||||| |||||||
Sbjct 1311 GTCATCCATTCGGAACTTGTGAGAG 1335
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66465521580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5