BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314093
Length=1704
Score E
Sequences producing significant alignments: (Bits) Value
AT1G43245.1 | Symbols: | SET domain-containing protein | chr1:... 2145 0.0
> AT1G43245.1 | Symbols: | SET domain-containing protein | chr1:16308882-16310930
REVERSE LENGTH=1824
Length=1824
Score = 2145 bits (1161), Expect = 0.0
Identities = 1513/1681 (90%), Gaps = 32/1681 (2%)
Strand=Plus/Plus
Query 1 ATGGAGATACTCGCGGCGGAGGATATCGAAATCGGCACAGATTTATTCCCACCGCTttct 60
|||||||||| |||||||||||||||||||||| |||||||| |||| || || || |||
Sbjct 48 ATGGAGATACGCGCGGCGGAGGATATCGAAATCCGCACAGATCTATTTCCGCCACTCTCT 107
Query 61 ccactcgcttcctctctctacgactccttcctctcctctcactgctcctcctgcttctcc 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 108 CCACTCGCTTCCTCTCTCTACGACTCATTCCTCTCCTCTCACTGCTCCTCCTGCTTCTCC 167
Query 121 cttctcccaccatctccgccgcagcctctctACTGCTCCGCCGCATGCTCCCTCACCGAT 180
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 168 CTTCTCCCCCCATCTCCGCCGCAACCTCTCTACTGCTCCGCCGCATGCTCCCTCACCGAT 227
Query 181 TCATTAACCAATTTCCCTCAATTCCCACCGGAGATAACCCCAATTCTCCCCTCCGACATC 240
||||| ||||||| |||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 228 TCATTCACCAATTCCCCTCAATTCCCACCGGAGATAACACCAATCCTCCCCTCCGACATC 287
Query 241 CGTACAGCTCTCCGTCTCCTCAATTCCACAGTCGTCGACACTTCCTCATC-CCCGCACCG 299
|||||| |||||| ||||||||||||||| | |||||||||||||||||| ||| |||||
Sbjct 288 CGTACATCTCTCCATCTCCTCAATTCCACCGCCGTCGACACTTCCTCATCTCCC-CACCG 346
Query 300 TCTTAATGGCCTTCTCACTAATCACCACCTCCTCATGGCAGATTCTTCCTTCTCAC-TCG 358
|||||| |||||||||||||||||||||||||||||| ||| ||||| |||| | |||
Sbjct 347 TCTTAACAACCTTCTCACTAATCACCACCTCCTCATGGCTGATCCTTCCATCTC-CGTCG 405
Query 359 CTATCCACCACGCCGCCAGTTTTATAGCCACTGTTCTTAGATCAAACCGGAAAAACACAG 418
|||| ||||||||||||| || |||||||| ||| ||||||||||||||||||||||||
Sbjct 406 CTATTCACCACGCCGCCAACTTCATAGCCACCGTTATTAGATCAAACCGGAAAAACACAG 465
Query 419 AGTTGGAAGAAGCAGCTATATGCT-CTGTGCTAACAAACGCCGTTGAGGTGCAAGATAGC 477
|||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||
Sbjct 466 AGTTGGAAGAAGCAGCTATATG-TGCTGTGCTAACAAACGCCGTTGAGGTGCACGATAGC 524
Query 478 AACGGACTTGTTCTTGGAATCGCTCTTTATGATTCAAGATTCTCTTGGATTAACCATAGC 537
|||||||| | ||||||||||||||| ||| ||||||| |||||||||||||||||||||
Sbjct 525 AACGGACTAGCTCTTGGAATCGCTCTCTATAATTCAAGCTTCTCTTGGATTAACCATAGC 584
Query 538 TGCTCTCCAAACTCTTGTTACCGTTTCGTCAACAACACGACGTCGTATCATGATGATCTT 597
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 585 TGCTCTCCAAACTCTTGTTACCGTTTCGTCAACAACAGGACGTCGTATCATGATGTTCAT 644
Query 598 GCCTATCCAATAACCATTCCTCAT-GTCAACAACACAGAAACATTATC--CAACTTAGAA 654
| | | |||| | || ||| ||| | ||| || | ||| | ||| ||
Sbjct 645 GTC-A-CCAA-CA-CA-GAAACATCGTC-A-AACTTAG--A-ATT-GCAGGAAC-AAG-T 691
Query 655 TTGCAGGAACAAGTAAGAACAAT-G----GGATATGGACCAAAGGTGATTGCTAGAAATA 709
||| || || ||| ||||| | | ||| ||||||||||| |||||| ||||| ||
Sbjct 692 TTG-TGGTACTAGTTTGAACAGTGGTAATGGAAATGGACCAAAGTTGATTGTTAGAAGTA 750
Query 710 TTAAGAGGATTAAGAGTGGTGAAGAGATCACTGTATCGTATATCGACTTACTTCAACCGA 769
| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
Sbjct 751 TCAAGAGGATTAAGAGTGGTGAAGAGATCACTGTATCTTATATTGACTTACTTCAACCCA 810
Query 770 CGGGATTGAGGCAGTCAGATTTGTGGTCGAAATATCGATTTATGTGTAACTGTGGACGAT 829
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 CGGGATTGAGACAGTCAGATTTGTGGTCGAAATATCGATTTATGTGTAACTGTGGACGAT 870
Query 830 GTGCAGCATCGCCTCCGGCTTATGTGGACTCGGTTTTAGAGGGAGTTCTTGTGTTGAAGC 889
||||||| || ||||| |||||||||||||| ||||||||||||||||| |||| ||
Sbjct 871 GTGCAGCTTCACCTCCAGCTTATGTGGACTCTATTTTAGAGGGAGTTCTTACGTTGGAGA 930
Query 890 CTGAAGAA-ACAACCGTTGATTACCATCATGGAACCACCAACAAAGATGAAGCAGTGGCA 948
|||| || |||||||||| | || | |||||| || ||||||||||||||||||| |
Sbjct 931 GTGAA-AAGACAACCGTTGGTCACTTTGATGGAAGTACTAACAAAGATGAAGCAGTGGGA 989
Query 949 AAGATGACTGATTATATCCAAGAAGCCATAGATGATTTTTTATCGGACAATATTGATCCC 1008
||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 990 AAGATGAATGATTATATCCAAGAAGCTATAGATGATTTTTTATCGGACAATATCGATCCT 1049
Query 1009 AAAACATGTTGTGAGAAGATCGAGAGTGTGCTGCATCACGGCATCCAGTTCAAAGCAGAC 1068
|||||||||||||||| ||| |||||||| ||||||||||||||||||||||| | ||||
Sbjct 1050 AAAACATGTTGTGAGATGATTGAGAGTGTTCTGCATCACGGCATCCAGTTCAAGGAAGAC 1109
Query 1069 TCACAGCCTCATTGTCTGCGGTTACATGCGTGTCACTACGTTGCTCTGAATGCTTACATT 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1110 TCACAGCCTCATTGTCTGCGGTTACATGCGTGTCACTACGTTGCTCTGAATGCGTACATT 1169
Query 1129 ACTCTGGCTACTGCTTACAGAATCCGTTCGATTGATTCTGAAACTGGCATTGTTTTTGAC 1188
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1170 ACTCTAGCTACTGCTTACAGAATCCGTTCGATTGATTCTGAAACTGGCATTGTTTGTGAC 1229
Query 1189 ATGAGCAGGATAAGTGCAGCCTACTCTTTATTCCTTGCAGGTGTTTCTCACCATCTCTTT 1248
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1230 ATGAGCAGGATAAGTGCAGCCTACTCTTTATTCCTTGCTGGTGTTTCTCACCATCTCTTT 1289
Query 1249 TCTGCAGATCCTTGTCTTGCTATTTCTGCCGCAAATTTCTGGAAAAATGCTGGAGAATCA 1308
| ||| || | || | ||||||| ||||| ||||| |||||||||||||||||||||| |
Sbjct 1290 TGTGCGGAACGTTCTTTTGCTATATCTGCAGCAAAATTCTGGAAAAATGCTGGAGAATTA 1349
Query 1309 TTGTTAGATCTGGCCCGGAAG-TTTCCGCTGGAACCATCTGTAGAATCTGATGTCAAATG 1367
||||| ||| |||||| |||| ||| | ||||| ||||||||||||||||||||||||
Sbjct 1350 TTGTTTGATTTGGCCCCGAAGCTTTT-GATGGAATTATCTGTAGAATCTGATGTCAAATG 1408
Query 1368 CACCAAATGTCTTATTCTTGGAACCCCCAATTCACACAAAGATATCAAAGAAAAGTCTAG 1427
||| ||||||||||| |||| |||| | |||||||||| |||||||||||||||||||||
Sbjct 1409 CACGAAATGTCTTATGCTTGAAACCTCTAATTCACACAGAGATATCAAAGAAAAGTCTAG 1468
Query 1428 GCAGATTCTGAGTTGTGTCACAGACATCTCACAAGTCACATGGAGTTTCCTCACACGCAG 1487
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
Sbjct 1469 GCAGATTCTGAGTTGTGTCAGAGACATCTCACAAGTCACATGGAGTTTCCTCACTCGCGG 1528
Query 1488 TTGCCCTTACCTGCAAAAGTTTAGGAGTCCAGTTGATTTCAGCTTGACGAGGACCATTGG 1547
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1529 TTGCCCTTACCTGGAAAAGTTTAGGAGTCCAGTTGATTTCAGCTTGACTAGGACCAATGG 1588
Query 1548 CAAGAGAGAAGAATCGAGTGAGGATCAAACGGTAAATGTTCTTTTACTCTCTTTTCACTG 1607
| ||||||||||||||||| |||||||||||||||| || ||||||||||||| ||||||
Sbjct 1589 CGAGAGAGAAGAATCGAGTAAGGATCAAACGGTAAACGTACTTTTACTCTCTTCTCACTG 1648
Query 1608 CTTACTCTACGCAGACCTTCTGGCTGATTTATGTTACGGTGAGAAGTCACATTTGGTGTC 1667
|||||| ||||||||||||||| ||||||||||||||||| |||| ||||||||||||||
Sbjct 1649 CTTACTATACGCAGACCTTCTGACTGATTTATGTTACGGTCAGAAATCACATTTGGTGTC 1708
Query 1668 t 1668
|
Sbjct 1709 T 1709
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84236514510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5