BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314116
Length=684
Score E
Sequences producing significant alignments: (Bits) Value
AT1G44010.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 811 0.0
> AT1G44010.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G15640.1);
Has 211 Blast hits to 210 proteins in 16 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 211; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:16714622-16715564
FORWARD LENGTH=778
Length=778
Score = 811 bits (439), Expect = 0.0
Identities = 593/668 (89%), Gaps = 7/668 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGGCCCTTTGCTAACCAAGAGTGAGCACATCAAAATCGATGGTGATTCTTCATCG 60
||||| || |||||||||||||||| |||||||||||||| |||| |||||||||||
Sbjct 35 ATGGAGGGGCCTTTGCTAACCAAGAACAAGCACATCAAAATCCATGGCGATTCTTCATCA 94
Query 61 AATGATGAGCATAATGTCAACATTACAATCACTGACGATTCTTCATCAACACCACGTGAA 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 95 AATGATGAGCATAATGTCAACATTACAATCACTAACGATTCTTCATCAACACCACACGGC 154
Query 121 GCCAAGGCTGTTGAACGGTGTATTCCTTCTTGCACAGGAGAAATGGAGTGGTGTTGTTTC 180
| || |||||||||||||||| | | |||||| ||||||||||||||| |||||||
Sbjct 155 GTTAATATTGTTGAACGGTGTATT-C--CATGCACAAGAGAAATGGAGTGGTTTTGTTTC 211
Query 181 ATCGAGTTTGTTCTCAATATTGTCCAAATTGTTGCAGCTTTTGTAGTTGTGAATCGGGCA 240
|||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 212 ATCGAGTTTGTTTTGAATATTGTCCAAATTGTTGCAGCTTTTGTAGTTGTGACTCGGGCA 271
Query 241 AAAGATGAACATCCAGAAACATCATTTCTTATATGGATCATCGGTTACACTTGTGGCTGT 300
|||||||||||||||| ||||||||||||| |||||||||| |||||||||||||| |||
Sbjct 272 AAAGATGAACATCCAGGAACATCATTTCTTGTATGGATCATTGGTTACACTTGTGGATGT 331
Query 301 GTTGCTATTCTTCTTATTCAATTTATAAACTGTGTTTCCTCAAGAAGCTACGAGGTGATC 360
||||| |||||||||||||| ||||| ||| || |||| |||||||||||||||| ||||
Sbjct 332 GTTGCCATTCTTCTTATTCAGTTTATTAACCGTATTTCGTCAAGAAGCTACGAGGAGATC 391
Query 361 ATAGAC-TTTGTGACGGAGATATTTGAATATTTCTTTGTGGGTTGGGTTTTGCTGTTTCT 419
|| ||| ||| ||| | | |||| |||||||||||| || ||||||||| || |||||||
Sbjct 392 ATGGACGTTT-TGAAGAATATATGTGAATATTTCTTCGTTGGTTGGGTTGTGTTGTTTCT 450
Query 420 TTGGATTTATCATAGCAGTTCATCATCTCTATATGATAATACTCAACATTTCTGGTTATG 479
|||||| |||||||| ||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 451 TTGGATGTATCATAGTAGTTCTTCATCTCTATATGATAATACTCAATATTTCTGGTTATG 510
Query 480 TATGGCTTTTCTTGCTTTCACTTGCATTCGATATATACCGGCTCATTTAATATTTTCAGC 539
|||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||
Sbjct 511 TATGGCTTTTCTTGCTTTCACTTGCATTCGATATGTACCGGCTCGTTTAATATGTTCAGC 570
Query 540 GATATGCTTCCTTTTCGTTGTGATAATATGGATTTGCGCCGCTGTGTTAGGCACCACCCC 599
|||||||| |||||||||||||||||||| ||||||||| |||||||||||| |||||
Sbjct 571 AATATGCTTTATTTTCGTTGTGATAATATGGTTTTGCGCCGATGTGTTAGGCACAACCCC 630
Query 600 TAATACGTTTGTTTATGTTGCATTCCTTATAATTGTCATTGGAATTCTTAAAGT-AGTTC 658
| || ||||| | ||| || |||||||||| || ||||||||||||||||||| | ||
Sbjct 631 GAGTATGTTTGCTAATGCTGTATTCCTTATAGTTTTCATTGGAATTCTTAAAGTCA-TTG 689
Query 659 AAGAGGTT 666
| ||||||
Sbjct 690 AGGAGGTT 697
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33104302873
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5