BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314121
Length=1065
Score E
Sequences producing significant alignments: (Bits) Value
AT1G44130.1 | Symbols: | Eukaryotic aspartyl protease family p... 887 0.0
> AT1G44130.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr1:16787508-16789318 REVERSE LENGTH=1218
Length=1218
Score = 887 bits (480), Expect = 0.0
Identities = 646/724 (89%), Gaps = 19/724 (3%)
Strand=Plus/Plus
Query 7 TCAAGATTCTCTCTTCTTCTGTTCTTGTTCTTGGTCATAGTTTCTCAATCAAAATCTTCC 66
|||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 7 TCAAGATTTTCTCTTCTTCTGTTCTTGTTCTTGGTCATAGTTCCTCTATCAAAATCTTCA 66
Query 67 GTCTTCAAAACCTTCCCCAGTAAtctctctcccaaatctcctctttcctcagtcgtcctc 126
|||||||||||||| || || | || ||| | | ||||||||||||| ||
Sbjct 67 ATCTTCAAAACCTTCATCA--AA------T-CC---TCT-C-C-TTCCTCAGTCGTCTTC 111
Query 127 cctctctccggcaacgtcttccctctcGGATACTACTCTGTCTTACTTCAAATAGGAACC 186
|||||||||||||||||||||||||||||||||||||| |||||| | |||||||||| |
Sbjct 112 CCTCTCTCCGGCAACGTCTTCCCTCTCGGATACTACTCAGTCTTAATGCAAATAGGAAGC 171
Query 187 CCTCCAAAGGCATTTGAATTTGATATTGATACTGGTAGTGATCTCACTTGGGTTCAATGC 246
||||||||||||||| |||||||||||||||| || || ||||||||||||||||||||
Sbjct 172 CCTCCAAAGGCATTTCAATTTGATATTGATACCGGAAGCGATCTCACTTGGGTTCAATGT 231
Query 247 GATGCTCCTTGCACTGGTTGTACTTTGCCTCCTA-TACGTCAGTACAAGCCTAAAGGAAA 305
||||||||||||| |||||| ||||||||||||| | | |||||||||||||||||||||
Sbjct 232 GATGCTCCTTGCAGTGGTTGCACTTTGCCTCCTAAT-CTTCAGTACAAGCCTAAAGGAAA 290
Query 306 CACTGTCCCGTGCTTAGACCCGATTTGTTTAGCACTTCACTTTCCTAACAAGCCTCAATG 365
|| | ||||||||| | ||||||| ||| ||| ||||||| |||||||||||||| ||
Sbjct 291 CATTATCCCGTGCTCAAACCCGATCTGTACAGCTCTTCACTGGCCTAACAAGCCTCATTG 350
Query 366 TCCAAACCCGAAAGAACAATGTGACTATGAAGTTAATTATGCTGATCAAGGTTCATCAAT 425
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 351 CCCAAACCCGCAAGAACAATGTGACTATGAAGTTAAATATGCTGATCAAGGTTCATCAAT 410
Query 426 GGGTGCACTTGTTATTGATCAGTTTCCTTTAAAACTCCTAAATGGCTCGGCCATGCAACC 485
|||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 411 GGGTGCACTTGTTACCGATCAGTTTCCTTTAAAACTCGTAAATGGCTCGTTCATGCAACC 470
Query 486 TCGTTTAGCATTCGGGTGTGGTTATGATCAGATTTTACC-TAAAGCACATCCTCCGCCCG 544
|| | ||||||||||||||||||||||||||| || ||| || ||||||||||||||||
Sbjct 471 TCCTGTAGCATTCGGGTGTGGTTATGATCAGAGTT-ACCCTAGTGCACATCCTCCGCCCG 529
Query 545 CGACTGCTGGAGTTTTGGGGCTTGGGAGAGGGAAAATTGGTCTCTTGACACAGCTTGTAG 604
||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct 530 CGACTGCTGGAGTTTTGGGACTTGGAAGAGGGAAAATCGGTCTCTTGACACAGCTTGTCT 589
Query 605 CCGCGGGACTAACGAGAAATGTGGTTGGACATTGCCTAAGTTCTAAAGGTGGAGGCTATT 664
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 590 CCGCGGGACTAACAAGAAATGTGGTTGGACATTGCTTAAGTTCTAAAGGTGGAGGCTTTT 649
Query 665 TGTTCTTTGGAGACACTCTCATTCCTACCCTTGGTGTGGCCTGGACACCATTATTATCAC 724
||||||||||||||| ||| ||||| || |||||||||| |||||||||||||||||||
Sbjct 650 TGTTCTTTGGAGACAATCTTGTTCCTTCCATTGGTGTGGCATGGACACCATTATTATCAC 709
Query 725 CAGA 728
|||
Sbjct 710 AAGA 713
Score = 385 bits (208), Expect = 6e-106
Identities = 259/284 (91%), Gaps = 2/284 (1%)
Strand=Plus/Plus
Query 783 CTTCAAATCTGTTCTTGAGTTTAAGAACTTCTTCAAGACCATAACAATTAACTTTACCAA 842
||| ||||||||||||||| | |||||||| ||||||||||||||||| ||||| |||||
Sbjct 936 CTTTAAATCTGTTCTTGAGGTCAAGAACTTTTTCAAGACCATAACAATCAACTTCACCAA 995
Query 843 TGCCAGAAGAATCACTCAGCTCCAGATTCCACCCGAATCT-TATCTCATCATCTCTAAAA 901
|| ||||||| |||||||||| | || ||||||||| | |||||||| |||||||||
Sbjct 996 TGGGAGAAGAAACACTCAGCTCTATCTTGCACCCGAAT-TATATCTCATTGTCTCTAAAA 1054
Query 902 CTGGTAATGCCTGCTTGGGACTACTAAATGGAAGTGAAGTAGGATTACAAAACTCCAACG 961
|||| || | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1055 CTGGAAACGTATGCTTGGGACTACTAAATGGAAGTGAAGTAGGATTACAAAACTCCAACG 1114
Query 962 TAATCGGAGATATCTCTATGCAAGGGCTAATGGTGATCTACGACAACGACAAACAACAAC 1021
|||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||
Sbjct 1115 TAATCGGAGATATCTCTATGCAAGGGCTAATGATGATCTACGACAACGAGAAGCAACAAC 1174
Query 1022 TCGGATGGGTTTCTTCAAATTGCAATAAGCTTCCCAAAACATGA 1065
||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1175 TCGGATGGGTTTCTTCAGATTGCAATAAGCTTCCCAAAACATGA 1218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52158366255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5